GgaINT0010698 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2606154-2606332:-
Coord C1 exon
chr20:2606329-2606332
Coord A exon
chr20:2606247-2606328
Coord C2 exon
chr20:2606154-2606246
Length
82 bp
Sequences
Splice sites
5' ss Seq
CTTGTGCTC
5' ss Score
-12.58
3' ss Seq
TCCTTGGTTTTGTTTTCCAGGGC
3' ss Score
10.72
Exon sequences
Seq C1 exon
CCTT
Seq A exon
GTGCTCCATTTCCCTGTGACATTGATGACAGATCCCCTCTGGCTGAGTGGGAGCTGATGCATTCCTTGGTTTTGTTTTCCAG
Seq C2 exon
GGCACCCTCGAAGATCAAATCATTGAGGCTAACCCAGCTATGGAGGCTTTTGGCAATGCCAAAACCATTAGAAATGACAACTCCTCACGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(0.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]