HsaINT0107872 @ hg38
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:7577]
Coordinates
chr14:23431585-23431869:-
Coord C1 exon
chr14:23431761-23431869
Coord A exon
chr14:23431678-23431760
Coord C2 exon
chr14:23431585-23431677
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CTCCTTCTTGGCCTCTGCAGGGC
3' ss Score
9.76
Exon sequences
Seq C1 exon
CGGAGAATCCGGAGCAGGGAAGACAGTCAACACCAAGAGGGTCATCCAGTACTTTGCTGTTATTGCAGCCATTGGGGACCGCAGCAAGAAGGACCAGAGCCCGGGCAAG
Seq A exon
GTAGGCCTGCTGCCCTCCAAGGTCCTGTACCGCAGAAAGGGAGGGAGAAGAGCTCTCACCTGCCTCCTTCTTGGCCTCTGCAG
Seq C2 exon
GGCACCCTGGAGGACCAGATCATCCAGGCCAACCCTGCTCTGGAGGCCTTTGGCAATGCCAAGACCGTCCGGAACGACAACTCCTCCCGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054:ENST00000355349:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGAAGACAGTCAACACC
R:
GGAGGAGTTGTCGTTCCGGA
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development