Special

RnoINT0096543 @ rn6

Intron Retention

Gene
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33654332-33654615:-
Coord C1 exon
chr15:33654507-33654615
Coord A exon
chr15:33654425-33654506
Coord C2 exon
chr15:33654332-33654424
Length
82 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TCCTTCTTGACCTCTTTCAGGGC
3' ss Score
10.19
Exon sequences
Seq C1 exon
CGGAGAATCCGGAGCTGGTAAGACTGTCAACACCAAGAGGGTCATCCAATATTTTGCTGTTATTGCTGCCATTGGGGACCGCAGCAAGAAGGACCAGACCCCAGGCAAG
Seq A exon
GTAGGCCTGCTGTCACGTAAGGGCATGCATTACAGAAAAAGAGTAGGCAGCCTTCACCCCCATCCTTCTTGACCTCTTTCAG
Seq C2 exon
GGCACCTTGGAAGATCAAATCATCCAAGCCAACCCCGCTCTGGAGGCCTTTGGCAATGCCAAGACAGTTCGGAATGATAACTCCTCCCGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.108 A=NA C2=0.097
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGAGCTGGTAAGACTGTC
R:
TCCGAACTGTCTTGGCATTGC
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]