RnoINT0096543 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33654332-33654615:-
Coord C1 exon
chr15:33654507-33654615
Coord A exon
chr15:33654425-33654506
Coord C2 exon
chr15:33654332-33654424
Length
82 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TCCTTCTTGACCTCTTTCAGGGC
3' ss Score
10.19
Exon sequences
Seq C1 exon
CGGAGAATCCGGAGCTGGTAAGACTGTCAACACCAAGAGGGTCATCCAATATTTTGCTGTTATTGCTGCCATTGGGGACCGCAGCAAGAAGGACCAGACCCCAGGCAAG
Seq A exon
GTAGGCCTGCTGTCACGTAAGGGCATGCATTACAGAAAAAGAGTAGGCAGCCTTCACCCCCATCCTTCTTGACCTCTTTCAG
Seq C2 exon
GGCACCTTGGAAGATCAAATCATCCAAGCCAACCCCGCTCTGGAGGCCTTTGGCAATGCCAAGACAGTTCGGAATGATAACTCCTCCCGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGAGCTGGTAAGACTGTC
R:
TCCGAACTGTCTTGGCATTGC
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]