MmuINT0103602 @ mm9
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:55609753-55610037:-
Coord C1 exon
chr14:55609929-55610037
Coord A exon
chr14:55609846-55609928
Coord C2 exon
chr14:55609753-55609845
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TCCTTCTTGACCTCTTCCAGGGT
3' ss Score
8.92
Exon sequences
Seq C1 exon
CGGAGAATCCGGAGCTGGGAAGACTGTCAACACTAAGAGGGTCATCCAATATTTTGCTGTTATTGCCGCCATTGGGGACCGCAGCAAGAAGGACCAGACCCCAGGCAAG
Seq A exon
GTAGGCCCGCTGTCATGTAAAGGCTTGCATTACAGAAAAAGAGTAGGCAGCCTTCATATCCCATCCTTCTTGACCTCTTCCAG
Seq C2 exon
GGTACCCTGGAAGATCAAATCATCCAAGCCAACCCTGCTCTGGAGGCCTTTGGCAATGCCAAGACAGTTCGGAATGACAACTCCTCTCGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093-Myh7:NM_080728:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCCGGAGCTGGGAAGA
R:
TCCGAACTGTCTTGGCATTGC
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: