BtaINT0097322 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21327622-21327912:+
Coord C1 exon
chr10:21327622-21327730
Coord A exon
chr10:21327731-21327819
Coord C2 exon
chr10:21327820-21327912
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
ATCCTTCTTGACCTCCGCAGGGC
3' ss Score
9.43
Exon sequences
Seq C1 exon
CGGAGAATCCGGGGCAGGGAAGACGGTCAACACCAAGAGAGTCATCCAATACTTCGCGGTCATTGCCGCCATTGGCGACCGCAGCAAAAAGGAGCAGGCCACAGGCAAG
Seq A exon
GTAGGCCTACTGTCCTTCAAGGGCCTGTACCGCAGAAAGGGAGGAGGAGGAGGAGGCCTCTCACCTGCCATCCTTCTTGACCTCCGCAG
Seq C2 exon
GGCACCCTGGAGGACCAGATCATCCAGGCCAACCCCGCCCTGGAGGCCTTTGGCAACGCCAAGACCGTCAGGAACGACAACTCCTCCCGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703:ENSBTAT00000061306:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGACGGTCAACACCAAG
R:
GGGAGGAGTTGTCGTTCCTGA
Band lengths:
181-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development