RnoINT0096585 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151132305-151132539:+
Coord C1 exon
chr3:151132305-151132328
Coord A exon
chr3:151132329-151132446
Coord C2 exon
chr3:151132447-151132539
Length
118 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
CTCATTCCTGCTGCCTCCAGGGC
3' ss Score
9.14
Exon sequences
Seq C1 exon
CAATTTCTGGCAACAAAAACCGGG
Seq A exon
GTAAGTAAAGGGCCCAGCTGGGGGCAGACAACATTTATGGGGTCCTGGGGATGCCCACTTCTCCTTACGACCAGAGATTCCATGGGCTGCTCTGGCCCCTCATTCCTGCTGCCTCCAG
Seq C2 exon
GGCACCCTTGAGGATCAAATCATCGAGGCTAACCCTGCCATGGAGGCTTTTGGTAACGCCAAGACTCTGAGGAACGACAACTCCTCCCGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]