DreINT0099908 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24970249-24970446:-
Coord C1 exon
chr11:24970426-24970446
Coord A exon
chr11:24970342-24970425
Coord C2 exon
chr11:24970249-24970341
Length
84 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TTTGAAATGACTTTTCCCAGGGA
3' ss Score
3.99
Exon sequences
Seq C1 exon
GCCCCTGCTACTAAAACAGGG
Seq A exon
GTGAGTATATCTTCAAACATGAAGACATACTGAATAAATTGGATCAAGGTAAGCTAAACAGCAATTTGAAATGACTTTTCCCAG
Seq C2 exon
GGAACTTTAGAGGATCAGATCATTGAAGCTAATCCTGCAATGGAGGCTTTTGGAAATGCCAAGACACTGAGGAACGACAACTCGTCCCGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.148
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(0.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTGCTACTAAAACAGGG
R:
CGAGTTGTCGTTCCTCAGTGT
Band lengths:
105-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]