BtaINT0097402 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75109822-75111072:-
Coord C1 exon
chr5:75110964-75111072
Coord A exon
chr5:75109954-75110963
Coord C2 exon
chr5:75109822-75109953
Length
1010 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCCTCTACCTCCTCTCCTAGGTC
3' ss Score
10.67
Exon sequences
Seq C1 exon
GGCCTTCGCCAAGCGGCAGCAGCAGCTGACGGCCATGAAGGTCCTGCAGAGGAACTGTGCCGCCTACCTCAAACTGCGAAACTGGCAGTGGTGGCGGCTCTTCACCAAG
Seq A exon
GTGGGTCTGGAGGGGCTCCGCGTGGCACAGGGACGAGCCGGCCTCACGCTGGCCTCCTGCGGGGCTCAGGCCCCGGGGCTGGCACTTTGCCCTCGTGTCCCCGGGCCCAGCACTTGAGCGGGGGATGGTCCTGCCCTGTGGGGTCTTGAGGGGCGTGAGCTGGGGTGTGTGTCCAGCGTGGATTGCCGAGGTGCTGCGGGGCTGGGCTGGGGCGGCTCCAGGGGCAGCTCCTGGGATGTCCAGGCCCTGCCTGCCCACCACGGCCCCGTGAGGTGACAGTGCTGCCCACTCAGGAAACCGTGGTCTGTACCCGGTGGCTAGGTCCTCCCCAGCCTATACAAAAAAATTCTCTTGTATTTAAAGTTGGTCAAGCTACTTTTGTTTATGGTACATAATTTGTGGTAACTGCAAAATACCATACCAACAAAAAGGATAAACAAGAAAGTAAAAATTCACCTATAATCCCTTCAACCTTGAGCCAACATCAATATTGAATAGATGTTTCAATATTTATTCCATTTTTTTTTAAACACTCCCATTAAATCTCTGCTGTGTAAACCATACATCTTCTTACATAGCTGAGCTTTTTGACTTGTGTAAATATTTTTTTTTTTGGGTTTTCCATTTAAAATTTTTTCATAAGCATAATTTTTTAAAAGTCAGCATACTGTTCCCTAGAGATGTTTTATAATTTATCTGGCTACTTTTCCGGCGGTGGATCTTTATCTCTTTGCTAAATTCTCACTGTTGTAAACAATGCTGTCCTGAAAATCTTCATGCACATACAGGGCTAGTTTCCCCGAACTGTAATTAGTGGGTCAGAGGCCTATGGCGCACAGCACCAAATTGATTTCCTGAAAAGCTGTACCCGGGCATACCTGCTCTGCCCAGGGTCCTGCCTGCCCCTTGTTCTCGTGCCCTTGCGCTTCCCCAAGTGAGGAGAAAGCCCCCAAATCTCAGCCTGGACGGGGCTCTTTCTCTGAGCTTGTCTCCTCTACCTCCTCTCCTAG
Seq C2 exon
GTCAAGCCGTTGCTGCAGGTGAGCCGGCAGGAGGAGGAGATGATGGCCAAGGAGGAGGAGCTGGTGAAGGTGCGGGAGAAGCAGCTGGCTGCTGAGAACAGGCTCTCAGAGATGGAGACCCTCCAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCTGACGGCCATG
R:
CTGGGACTGGAGGGTCTC
Band lengths:
222-1232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]