HsaINT0107969 @ hg38
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36301534-36302676:-
Coord C1 exon
chr22:36302568-36302676
Coord A exon
chr22:36301666-36302567
Coord C2 exon
chr22:36301534-36301665
Length
902 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
ACCTCTATCTCCTCTCCCAGGTC
3' ss Score
11.37
Exon sequences
Seq C1 exon
AGCATTTGCCAAGCGGCAGCAGCAGCTTACCGCCATGAAGGTCCTCCAGCGGAACTGCGCTGCCTACCTGAAGCTGCGGAACTGGCAGTGGTGGCGGCTCTTCACCAAG
Seq A exon
GTGCGTGCTAGAAGGGCCTCCTGAGTAGCTGGGACTACGGGTGCACACCACCATACATACCTGGCTAATTGTTTGTATTTTTTGTAGAGGTGTGGTCTCACCATGTCGCCCAGGTTGGTCACAAACTCTTGGGCTCCAGCAATCCTCCTACCTCAGCCTCCCAAAGTGCTGGAATTACAGGCATGAGCCACTGTGCCCGGCCCTTTTTGATTTTTAGTAGAGACAAGGTCTCACTATCTTGCCCAGGCTGACCTTCCTGGCCTTTAAAAAAAAAATCTCTTTATTTTTAAACTTGTCCGGGCTGCTTTTGTGTATAATACATAATTTATGGTAATGGCGAAAAACCAACTCACAAAAAGCCTAAAGAATTAAATAAAAATTCACACATAAACCCTTAGCCTAAACCAACAGCAGCAGCTATTTTAGTGTTTAATTTCTCGCTCTTTTTCTCACTGCCTATAAAACCTCAGCTATGTAAACAGTATACATTCTTCCATAGCTGAGTTTGACTCATATAAACAGTTGTAGTTCGTACGTTCCATTTATGATTCCTTCATAAGCATCGTTTTTTTAGAGGTAGTGTGCTGTTCCCTAGGGAACACATCATTATCTGGGTACTTTTTCAGAGATGGGTCCTTCCTCATTTTCTTGCTGTGATAAACAATGCCGAGGTGAACATCTTCACGCACACGCAGGGATAGTTTCCCTGGAATGTAGTTAGCGGGTCAGAAGCCCGTGGTACAGAGCGCCAGGAAGGATGTGCCTGCTTGCAGCCCCCACCACAGCGTGTCTTCTTGCCCCTCACTTTCATGTTTCCAGAGGTGAGGGAGAGGCCTCACACCTGTTGGCAGAGGCGGGCATCTTCCAGCCGAGCATGTCTCTACCTCTATCTCCTCTCCCAG
Seq C2 exon
GTCAAGCCGCTGCTGCAGGTGAGCCGGCAGGAGGAGGAGATGATGGCCAAGGAGGAGGAGCTGGTGAAGGTCAGAGAGAAGCAGCTGGCTGCGGAGAACAGGCTCACGGAGATGGAGACGCTGCAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345:ENST00000216181:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCTTACCGCCATGAAG
R:
CTGAGACTGCAGCGTCTCCAT
Band lengths:
222-1124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development