GgaINT0105094 @ galGal3
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
NA
Coordinates
chr1:53805057-53806291:+
Coord C1 exon
chr1:53805057-53805165
Coord A exon
chr1:53805166-53806159
Coord C2 exon
chr1:53806160-53806291
Length
994 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TCCCTTGGTATCCTTTTCAGGTG
3' ss Score
11.07
Exon sequences
Seq C1 exon
AGCTTTTGCCAAGCGCCAGCAGCAGCTGACAGCCATGAAGGTGCTCCAGAGGAACTGTGCTGCCTACTTGAAACTGCGGAACTGGCAGTGGTGGAGGTTGTTCACCAAG
Seq A exon
GTAATATTTTTTTCATTTATAAGAGTTTTGGCAAGAGTTTGTAGTTGTGATTTAAACTTCTCAGGTTGAACCACAGCAAAAAAAAAACCAAAACAACAACAAAAAAAACCCACTTCCTTTCCAGTTGGGCTTGCTTTTATAACTGCATCTTGATTCATTTAGATAGAGAACATTGTGACATATCTTGTATCTGTGCAGTATGCCTGCATAAAAAAAAGTGCAAGGCTATGTGCAAGTAATGTGGAAAAGCAGAAGTCATCATTTAGTGTTCTATGCATAGAAGAGGATTGCTTGCTTCGGTAGTATATCACTTCAAAAACTCACTCACTACATGGCTAGTCAGTTTAGCTAGACAAAAATTGTTAACATGGAGAGGGGTGTGTCATCTCATTCTCCAGAGTTGTGAAAGCCCAATGAAAACACTGGAGTCTGATTCTACTGTTAGACTTGTACATATTTTATCTTTATAAAGACAATGAGTACATGAAGAAATGGTCTTTTTCCCAAACTCATGGGATTTTTTGCTCTTCAACCATGGAGACTTTGCAGCTAAATCAGAGTTGAAACTAGTTTTCTTCTTTCTATGAAGACTTCTAGGGTTTTTGGTGGGGAAGCACAGAGATGAGTGGTGGTGTTGTTTTGTTTACATTGACTGCCCGTGAACTGTAATTTGCCCCACTGGATGGCAAATCTATTTTACTGTTATTACTGCTTACTCCTTGAGAGTCTGGAATTTTTTACCCATTGCCTTCCTGAATTATCCCACCCTGGGGGAAATATTGGTTAGCCAGGCAAGCAGAGGGTTAGTGGCAAAATAGATTGTATTTAGTCCTCTGTGATTCTCCCATGGTTCATAATGAAGTAATTGATCAGTCCTTCAGATATGATACTTACAAAAAACGTTGTTTTATTGGATTCTCGTGATGTACAAGAGCATTTTGTTGTGTTCTCAATGTTCATTAAATACATCCCATTCCCTTGGTATCCTTTTCAG
Seq C2 exon
GTGAAGCCCCTATTGCAAGTAAGCAGACAGGAAGAAGAGATGATGGCCAAGGAAGAAGAACTAATAAAGGTTAAGGAGAAGCAGCTAGCTGCAGAAAATAGACTGAGTGAGATGGAGACTTTCCAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(16.6=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGCCAAGCGCCAGC
R:
CTGGGCCTGGAAAGTCTCC
Band lengths:
239-1233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]