BtaINT0097406 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75107208-75107756:-
Coord C1 exon
chr5:75107633-75107756
Coord A exon
chr5:75107380-75107632
Coord C2 exon
chr5:75107208-75107379
Length
253 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TCTCCACTCTTCCTTCTCAGAAC
3' ss Score
10.76
Exon sequences
Seq C1 exon
GAGAAGAAGCTGCTGGAAGACAGAATAGCCGAGTTCACCACCAACCTCATGGAAGAGGAGGAGAAATCGAAGAGCCTCGCCAAACTCAAGAACAAGCATGAGGCGATGATCACCGACCTGGAGG
Seq A exon
GTAAGTAGTGGGACGCAGGGACTGTTGGACTTGGGGTTTCCGGGGCACCCACCACTCGAGGACCAGCATGGACCTTGCTGCCAGGAGCTGGGGTGGCAAGCAGGTCTCCCGGGGCCTGTGGCATCCAGCCACTACCCTCCAGACGTGGGACATGGCAGCTGCTCCCTGTGAAGCCTGGTATTTTATATAAGATTTGAAGACAAAGAGAAGCCACTGAAGACTCTGTTGGCCTCTCTCCACTCTTCCTTCTCAG
Seq C2 exon
AACGCCTGCGAAGAGAGGAGAAGCAGCGCCAGGAGCTGGAAAAGACCCGCCGGAAGCTGGAAGGAGACTCCACTGACCTCAATGACCAGATCGCTGAGCTGCAGGCTCAGATCGCCGAGCTCAAGATGCAGCTGGCCAAGAAGGAGGAGGAGCTCCAGGCAGCCCTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.724
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(27.7=100),PF115593=ADIP=PU(10.0=19.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(30.4=77.6),PF115593=ADIP=FE(71.2=100),PF0157614=Myosin_tail_1=PU(2.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGCTGCTGGAAGACA
R:
GGCTGCCTGGAGCTCCTC
Band lengths:
287-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]