DreINT0099735 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7472946-7473318:+
Coord C1 exon
chr6:7472946-7473069
Coord A exon
chr6:7473070-7473146
Coord C2 exon
chr6:7473147-7473318
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TATTTGTGTTTGAACATCAGAGC
3' ss Score
3.9
Exon sequences
Seq C1 exon
GAGAAAAAGCTCCTGGAGGACCGTGTCGGTGAGATGACCTCTCAGCTGGCTGAGGAAGAAGAGAAGGCCAAGAACCTCGGCAAAGTCAAAAACAAGCAAGAGATGATGATGGTGGACTTGGAAG
Seq A exon
GTGAGGACAGGGTTGATTTTGTTTTGTTCTATTGGATATAAAACAATAAGTTTTACGTATTTGTGTTTGAACATCAG
Seq C2 exon
AGCGTCTGAAGAAAGAGGAGAAAACTCGACAGGAGCTTGAGAAAGCCAAAAGAAAACTGGATGCGGAGACCACAGACCTACAAGACCAGATAGCTGAGCTGCAGGCCCAGATTGATGAACTTAAGATCCAACTGGCCAAGAAAGAAGAGGAACTGCAGGCTGTGTTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=NA C2=0.540
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(17.1=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(17.5=72.4),PF0157614=Myosin_tail_1=PU(2.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAACCTCGGCAAAGTCA
R:
GTTCATCAATCTGGGCCTGCA
Band lengths:
177-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]