GgaINT0127255 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1703544-1706026:-
Coord C1 exon
chr18:1705903-1706026
Coord A exon
chr18:1703716-1705902
Coord C2 exon
chr18:1703544-1703715
Length
2187 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
AATCTTTGTCACTTCTACAGAGC
3' ss Score
7.32
Exon sequences
Seq C1 exon
GAAAAGAAGCTGATGGAGGATAGAATTGCTGAATGTACTTCTCAGCTGGCTGAAGAAGAAGAAAAGGCTAAAAATTTGGCGAAACTGAAGAACAAACAGGAAATGATGATCACTGATTTAGAAG
Seq A exon
GTTTGTTCTTTTACATCTGCCTATCAGCAGCTCTGAGGTCATGCTAGAAAGGGATGGATCACTTACAGCCATGTATAGATATCTGGTTTGGTCTTCCAAATGTACCCTTATATGTACATACCTTAATAGCTGTTGTTTGTTATTTAAACCTTGTGAGAAATGTTGTGCTCTTGCAAGCCTTGTTGCATCTGGCTTCTCTGTGTTATTCTTCAACTCGTGTTACAGTTTTGAGAATCCATTTCATTTACAGATGCTTTCAGGAATTCGTGATGTTGCACGAATCCCATAGTAACAAGGTAAAGCATCTGTCTCTTAGGAATTTGCTATGCCTCTCTATAATAACTTCTTAAAAAAACATTCTAAAAGAATGTGATTAGCCATTCATTTATTCAGAAAAGTAAAAAAGAAATGAGAAGGCTGAGCAAACATGAATTGTTTTTCTCAATGTTTTGTATGTCTGAAATGGTTCCATTTTTCTGTCCATTTTTTCTGGTTTGCTTAACTGTTTTGTCACAGATGGAAGCTGCCCTGCGTATATACGTAACCCCTCTTAATTTGAAAAGTGAAATAAATGTATTAAAAACGCTGATGGTTGTACATAGCTATTATACAGTGTGAATAGAGTGCCAAGTCAAAATTGCAGAATGTAAGGCAAAAATTGCTCTGTGCCCTAATTTGGAAATAGTTTTTCACCAGCTATTTGGTGGCCTGTCTTGCCACATCTTTTAAGACTGAGGTGCTTATGGGAGAATACCAGAGCTACGTTTTCTCTGTGTAGGTAGGTGTTGAGCTCATAGGGACAGAAGGAGATTAATGTGCTTTTCCTTTAAAAATCAGCTTCAGAGACCATAAGTTGGGTATGAGTAAAACTGGAAAATAACTCTGGAGTCGTCGTTTGCTTGAATCAGGATTAGTGGTTTTGAAGCTATTTGACAGATGTGTTTGGTTATGGTGCCATTCTAAGATTGATGACCAAAAAATGGAAATTAAAGCTTAAATGTAAGGCATGCAATTTCTTGGCTAGCAAAGCACTATAGAATATTTACTCTTGGCAGTGGTTCAAGAAGCCTTAAAGCTTTCTCTGCCTGAGTCTTGGCACTGTTGGGCACTAAAATTTGGACCAAAAACCAATTAATTTTGCTGTGAGATTTCTTGTGTCTTCTCACTGTCTTGTGACAGTGTTCTGACTAAAGCTCCTCAGAAATATGATGTGAAAACAGAAGGAAAAATGTGTTTTTTTGTTTTGTAAGAAACTTTTTAGAGGGAGAGGATTTTCCAGAAAGACATACTTATGGTCTGAATTACCCCGGGTGGCTGTGAGAGATCATTCTTGGGCATCATAGCTCTCTTTCCATAAAGAAGATGAGGGCCTGAACCAGTAGCAAGCTTAGAAAGTGTGGGAAAGAAAACTACGTATAGAAGACCCACAAAATCTTAACTGAGTCTAATAATTATGTTTATGCTCTTGTATGTGGAATTATGCTAATTCTGTGCTGAGCACTAGTGGTTTGGAAAACTTGCTGTGGTTGCAGTGCGTTACATACCTGACTGCTGAGCAGTGCTGCAGGTAGTGACTGCCTGCTCTCACAACAGGCAGAGGTGGATGAGGTGCATTGATAGAGCACTGATAAGTGGGTGTTCTTCACAAAGAAATGCCTCAGGGCAGGAGTGTCTCAACTAAGAAAGCTTAAAGTTTGCAAAGCCTTGCTAAATATCAGTGGATGTGTTAGTGGCTCAGATGCTTCCAAAAAACTGTTTGTCCAAACTTTGAACCTGTACTTTCCAGTGGATCTTTTGGAGCCTTGCCTACCCGTTCAGAAGCTGTGGACTCTGTCATTTTTTCCAGACCTTTGCTGATACTCAGTTTTGAATCCTTGTGCATGTGATCATCTGTCCTAGCAGTTCAAACTGCTCTTCTGCCAGACCCCATTCCTGACTTTCTATTAAGGCTGAGTTGTTTCTGTTCCCTTACTTCAAACTTTTTGCTTCCTCCAAGATAGCTGACTTTTCCTGAACTTTTTTCTGCATCATGAAGTTTTGCTTCTTTATTTTATCTCTCCTGAGTGAAAAATTGACTTAATATGAATTAAACTTCCACCCCTCCTGCCACCCTGTTCCCTTGCCCCCAAACCTTTGGAGGATTATTAGATTTAAAAAACAACTTACAAATCTTTGTCACTTCTACAG
Seq C2 exon
AGCGCTTAAAAAAGGAGGAGAAGACACGTCAGGAATTAGAAAAAGCTAAGAGAAAACTGGATGGTGAAACAACAGATCTACAGGACCAAATAGCTGAGCTGCAGGCCCAGATTGAAGAGCTGAAGATCCAGCTGGCCAAGAAGGAGGAAGAGCTGCAGGCTGCTCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=NA C2=0.655
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(26.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(27.1=72.4),PF0157614=Myosin_tail_1=PU(2.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]