MmuINT0103229 @ mm9
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68604119-68605536:+
Coord C1 exon
chr11:68604119-68604242
Coord A exon
chr11:68604243-68605364
Coord C2 exon
chr11:68605365-68605536
Length
1122 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
GCTTCTGTCCTGCCTTACAGAAC
3' ss Score
10.97
Exon sequences
Seq C1 exon
GAAAAGAAACTCATGGAAGACCGAATTGCTGAGTGTTCCTCTCAGCTGGCTGAAGAGGAAGAAAAGGCAAAAAACTTGGCCAAAATCAGGAATAAGCAAGAAGTGATGATCTCGGACTTAGAAG
Seq A exon
GTTGGTGTTGGCCCAGAGACCTTAGTGTTGTGCCTGAGTCAGAACAGCCCGGCGACTGCTTAGATGAGGAGTTCTGTTAACAGAGACCCTCCCAGGTTGCGTGGCTTGGTGTCTGGTGGGTGGAATGGAATCGGATGGGTTCCTTTGTTCTTTTTAACTTGCCTTTAATGGACGTTCTGGGCATTGGCTCCAAACACTGAGGAAGTGCCCTGGTGACACCTCACAAAGGGATTGGCCAATGGCAGAGCCTGGTGGGTCAGAGGTGAAACTGGGGAGAGGCAGCGGCAGCAACTCTGGCTGCTATGATGTCACAGTCAAGATGGCGGACGACAGGACAGAAGCTGTGAGGTCGGATGACCTGTCCTTAATCCTGCTGTCTGTACAGCGAGTGCTGTCTGTAGGGGCCCTGCAGAGGCGTGCCCACCAGCTTCCTTAAGCATACTTTACAATGGGAAACATGGGCTTGTATAGTTTAAAAAAAAATACTTGGGGTTGGGGAGGAATTTTAGGTGCTTTGTTTGTTTGTTTATTTGTTTGTTGGGTTTGGTTTTGGTTTTTTGGTTGATGTAGATAAAAGATGGACCATCAGCACAAACTTATTTTTGTCAACTTCCTTGCTACCCTCTGGGTCCTCTGCTAAAGCGATGCCCATGAGGTGGATGTGCCCATCCTGGGGCATCTTAGCAGAAGGAATCTTGTCAAAGAGTTTAGGACTCACGGGTCACACTGCTTGAGCAAATCACGGGAACAGAAGTGGTACAGCCTTTCTTAGGGCAAACATGTGGCCTCTGCCTGCTCCTCTGTCTGCTCGCCCCATCTTAGGGCTGGGGGCTAGCCTGGGGTTAGCTTCCTTCCCAGTTCTGGGCATAGGGATGGTGTGATACAGCACCAGATCATCTTGGCTCTTAGCAGGATAGACCCCTTTCCAAAGCAGGGGCAGCTTTGGACAATGCCCATTTCTCCTTCAAACCCTACCCGTATCCTCATCTTCTCACCGCCATTCCATCCTGGCGGCTCTCAGATGACCAAGCATGGACTCGGGATTATCAGAGCCATGACCACATCCACTTACTGTGTGTGCTCTGCAGTGTGGTGAAGGGCTGCTTCTGTCCTGCCTTACAG
Seq C2 exon
AACGCTTGAAGAAGGAGGAGAAAACTCGACAGGAACTGGAAAAGGCCAAACGGAAGCTGGATGGGGAAACAACCGATCTGCAGGACCAGATCGCTGAGCTGCAGGCACAGGTCGATGAGCTCAAAGTCCAGTTGACCAAGAAGGAGGAGGAGCTTCAGGGGGCGCTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-Myh10:NM_175260:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.741
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(17.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(17.4=70.7),PF0157614=Myosin_tail_1=PU(2.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGAAACTCATGGAAGACCGA
R:
CCCCCTGAAGCTCCTCCTC
Band lengths:
286-1408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: