BtaINT0097094 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28699780-28701239:-
Coord C1 exon
chr19:28701116-28701239
Coord A exon
chr19:28699952-28701115
Coord C2 exon
chr19:28699780-28699951
Length
1164 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TTCTTGTATCTTGCCCTAAGAGC
3' ss Score
5.46
Exon sequences
Seq C1 exon
GAAAAGAAACTCATGGAAGATCGCATTGCAGAATGTTCCTCTCAGCTGGCTGAAGAGGAAGAAAAGGCAAAAAACTTGGCCAAAATCAGGAATAAGCAAGAAGTAATGATCTCGGATTTAGAAG
Seq A exon
GTTAGTGTTTGGGGGTTAGAGAAATTGTAGGACTATGACATGTTAGCCTTTAAGATTTTACTTATATCAGTGAATTGAAAGTTGCTCAGTGGTGTCTGACTCTGCGACCCCATGGACTATACTGCCCATGGAATTCTCCAGGCCAGAATACTGGAATTGGCAGCCTTTCCCTTCTCCTGGGCATCTTCCCAACCCAGGGATCAAACCCAGGTCTCCCACACTGTGGGTGGATTCTTTACCAGTGGAGCCACCAGGGAACCCCAAGAATACTAGAGTGGGTAGCCTATCCCTTCTCCGTATCTTCCCGACACAGGAATCACACTGGGGTCTCCTGCATTGCAGATGGATTCTTCACCAGCTGAGCTATCAGGGAAGCCCAGATAACTTACATCAGAACATGCCGTAATAGTAAATGTACATGAGGATTGCTCATCAGTTTGGGTTTGCTAGACTAGGCCTCTTAAATGGGACTGTCCTTTGCCTAGTCACCAAATACTAATATTTATGATGGAAAGGCACTAAATTATCTTTAAACTTTGATTTTTTAAAGTCAGTTTCTGTGGTAATACACACTGCCCTTTGGTGGGCACAGTTGGGATCTAAGTCACGTTGGAGCCACGCAGACTGTTGAACTTGGATGTGTTTAAACGCTGTGTTAAGGTGCCTGGTTCTCACTTCACAAAGGGACAACTGCTGACACAGGAATGGCAGAGACAGGAGAGTATGTGGAGGCTGGCAGTGTCTCACTCTGATGGCCCAAGTCATGTCAGGAAATGCTAGAATTTTTTGCAAAATCCAAATCATTGCCTTATGCAAAAGAAACATCAGGGTGGAAGTTAGGAGCACAGAAAACCCTCCCTTTGACCAGCAGCTGCACACAGGTGTCTGAGGGAGCAAGAGTGTAGCTCCAATCACCCTGCTGTCCCCAGATCTTTTATAACCGGAGGAAATAAGTGGTTTCTAGAAAATATTTGGGATTTTGTTGTCCTCATTCTCAGCATGAGATTCTTCCCATAAACCATTATTACCCGCAGATGATACTAAGGCAGCAACAGGCTTTAGAATACAGTGGCTTGTTTTCAACTCTAACCAGTCTGTGTTTTGAATGTGTCCCTATGGAGTGATGTTCAGTGTGTTGAAGAGCTTCTTGTATCTTGCCCTAAG
Seq C2 exon
AGCGCTTAAAGAAGGAGGAGAAGACGCGCCAGGAGCTGGAGAAGGCCAAAAGGAAACTGGACGGGGAGACCACGGACCTGCAAGACCAGATCGCCGAGCTCCAGGCGCAGATTGACGAGCTTAAGATCCAGGTGGCCAAGAAAGAGGAGGAGCTGCAGGGTGCCCTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151:ENSBTAT00000028188:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.621
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(17.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(17.4=70.7),PF0157614=Myosin_tail_1=PU(2.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGAAACTCATGGAAGATCGCA
R:
CACCCTGCAGCTCCTCCT
Band lengths:
286-1450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development