HsaINT0107474 @ hg38
Intron Retention
Gene
ENSG00000133026 | MYH10
Description
myosin heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:7568]
Coordinates
chr17:8506318-8508677:-
Coord C1 exon
chr17:8508554-8508677
Coord A exon
chr17:8506490-8508553
Coord C2 exon
chr17:8506318-8506489
Length
2064 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TCTTATGTCTTACCTTAAAGAAC
3' ss Score
6.97
Exon sequences
Seq C1 exon
GAAAAGAAACTCATGGAAGATCGCATTGCTGAGTGTTCCTCTCAGCTGGCTGAAGAGGAAGAAAAGGCGAAAAACTTGGCCAAAATCAGGAATAAGCAAGAAGTGATGATCTCAGATTTAGAAG
Seq A exon
GTTAGTATTTGGGGCTAGAGAAATCAGGGACTAGGACATGTGAGTGTTTAGCTTTTACTGTAATCAGAACATGCAAAAATAAAAAATATACATGATGATTACTAATAATAAGGACCTTCAGTTTGGGTTGACTTATTAAAATAGGTCCCTTGGCTGGGCACGGTGTCTCAGGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCAGGAGGATCTCATGAGGCCAGGAGTTTAAGACCAGCCTGGGCAGCATAGTGAGACTCCATCTCTACAAAAAATTTACAAATTAGCCTGGCGTAGTGGTGCACATCTATAGTCCCAGCTACTTGGAAGCTGAGGCAGAAGGATTGCTTGCGCCCAGGAGCTCACCAGAGTGAGCTGTGATCGTGGGGTGACAGAGGCAGCAGAATTGCTTGTGCCCAGGAGCTCACTGTAGTGAGCTATGATCATGCAACCGCACTACAGCCTGGGTAACACAGCGAGACCCTGTATTTAAAACATAATAAAAAGGGCTCTTAAGATTATTTTGTGTTGCCTTGAAATGATGATAAAATGGTTTTCCTTTTTCTTTTTCTTTTTTTTTAAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCCATCTCCCGCGTTCAAGCAATTCTCTTGCCTCAGCCTCCCAAGTAGCGGGGATTACAGGCATGCACCAACCACACCTGGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTTAGGTGATCCACCCACCTTGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCATGGCGCCAGGCCTGGTTTTCCTTTTTTAACTTTGGTACTGTGGTAAAAGATACTGTTCTTTGGTGGGCATGGTTGGGGTTATATTGTTTGGGTCCTACAGACCATTGTGTTTAATCTAAAGCTGTATTAAAGTGCCCACAAAGTACCTCACAAAGGGACTGGCCAGTGACATAAAAGCTGGCAGATACAGAGAAGACACTACTGAGGGCCAAGCCACAGTGTAATATCAGGAAATCCTAGGACATTACAGCTTCTGCAAAAGCAATAAGAAAAGAGGATGGAAGTTGGAAAGAGCAGCTAGAGACTGGTACCATCACCAGGGGGAGGGAGCTCTGTGCAGGCGCCTGCAGGCAGGTGCCCACTCTTGGTTAATGTGTGCGTTTATGATAGGAAGACGATGGGGTTGGCTTTTAAAAAATATTTGGGGTTTTATTTGTTTGTTTGTTTTAGTATAAACAAAAGAGGGCATGTCAGTATGAAATTACTTTCATAAACCATTTGTACTAGTATATGGTTCTTCTGCTGAGGAAGTACCCATAAGCACATGTGCTTTTTTACTCACCTGTTTGATCAGCCTGTGACACTCGGTCTCATCCTCTCAGCAAATTGGTTCCTGGTGGAGAACACAAAGGCATACAGGTTGTTGTGAGGAAATAAATCATTCAGTGAAATAGATCACTAGGGCTAACTGAGAGATCACTGCAGAATTTTAGAGGGGAGGGTGGAGAAAAGGCCTGGCCCTCTCTGCCCACTCTTCTGTCTCCTCTCTCCCAGTACTCGAGGATGGCAGTTTTCTTGGTTCAGAACAGGGGTTCCCATGGAAAAGGGAATGGGGTGACAGGCAGCTACGATTGCTGCCCCAGCACCTGCTGAGCCACTTTGCAAACCTGGGTACAGTGATGTGTTTGACATGAGAGGATTCCAGCTCCCTTCGGCTCTCACAGTGTGGTCTCACCTCCCATGAAAGGACATTCTTAGGACACTCAACTTCTTCCTTAAAATTCCCTCCCCACACTAATTTATCTCCCCTCCAGATCTCGGTGGGTTTGAAATGACTGAGCAGTTGACATCAGCGCATGACCATGTCATCAGGGCAGTGACATGCTTTTGAATAAAATGGCTTATTTTCAACTTGGATCAGTCTGTATTTTAGTTTATTCCTGTGGTGAGTCACTCGGTGTGTTGAAGAGCTTCTTATGTCTTACCTTAAAG
Seq C2 exon
AACGCTTAAAGAAGGAAGAAAAGACTCGTCAGGAACTGGAAAAGGCCAAAAGAAAACTCGACGGGGAGACGACCGACCTGCAGGACCAGATCGCAGAGCTGCAGGCGCAGATTGATGAGCTCAAGCTGCAGCTGGCCAAGAAGGAGGAGGAGCTGCAGGGCGCACTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026:ENST00000269243:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.621
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(2.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development