RnoINT0096318 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55382302-55383765:+
Coord C1 exon
chr10:55382302-55382425
Coord A exon
chr10:55382426-55383593
Coord C2 exon
chr10:55383594-55383765
Length
1168 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
GCTTCTGTCTTGCCTTTCAGAAC
3' ss Score
11.72
Exon sequences
Seq C1 exon
GAAAAGAAACTCATGGAAGATCGAATTGCTGAGTGTTCCTCTCAGCTGGCTGAAGAGGAAGAAAAGGCAAAAAACTTAGCCAAAATCAGGAATAAGCAAGAAGTGATGATCTCGGATTTAGAAG
Seq A exon
GTTGGTGCCAGCCCAGAGACTCTTGGATGTTGTGGTTGTACCTGAGTCAGAACAGCCAAGCAAGCCCAGGGATTGCTTAGATGAGGAATTCTGCTAACCAACATCCTCACAGGTCATGTGGCTTGGTGTTTGGTGGAATAGAACTCAGATGGGTTCCTTTGTTCTTTTTAACTTGCCTTTTAATGGACATTCTGGGCATTGGATCCAAACACTGGGGGGAAGTGCCCAGGTGACACCTCACAAAGGGATTGATCAACAGCAGAGTCTGGTAAGACAGAGGTGACACTGGAGAGAGGCAGTGTCAGCAACTCTGGCTAACATGATGTCACAGTCTAGACGGCTGAAGACGGGACAGAAGCTGTGAGGGGTGGATGACCTGTCCTTGAGCCTGCAGCTAGAGAATGCTGTCTGTATGCCCTGCAGAAAGTGTGCCCACCAGCTTTCTTATGCATACTTTTACAGTGGGAAACATGGGCTTATGTATTTTTAAGAAAAAAGACTTGGGGTTGGAAAGGGGATTTTGGTGCTTTTTTTTGTTTGTTTGGGGTTTTTTTGTTGTGGGTTTTTTTGTTTTGTTTTGTTTTTTGTTGATGTAGATAAAAGATGGAATGTTGACATAAACTTACTTTTGTCAACTTCCTTGCTACCCTCTGGGCTCTCTGCTAAAGAAGTGCCCATGAGGTGGGTGTACCCATCCTGGGACATGCTCTTAGCAGAACGGAGGGCTCCTGCTAAAGAATTCAGGGCTCACAGGCCACACTGCTTGAGCAAACCACAGGAACAGAAGTAGTCACCAGCCCTTATTAGGAAGTTATACCAGAGAGGCTGGGGAAGACACGTGGCTCTGCCTACTCCTGTCATTCTCCCCTGTGCTTCTCAGGGATGGGGGCCATGATCCTCTGGTTAGCTTCCTTCCCAGTCCTGGGCACAGGGAGGTTGTGACACAGCTCCATATTATCTTGGCTCTTAGCAGAGTGAATTCACTTTCCAAGAGAAGCGACGGCTTTAGACAGTGCCCCACTTCTCCTTCAGATCCTATCCATGTGCTCAGTCCTCTCATCTCTGTTCAATCTTGGAGGGTCTCATGACCAAGCACTCGACTCAGGGTTATCTAAGCTGTGACTGCATCCACTTACTGTGTGTATTCTGCTTCTGTCTTGCCTTTCAG
Seq C2 exon
AACGCTTGAAGAAGGAGGAGAAAACACGGCAGGAACTGGAAAAGGCCAAACGGAAACTGGACGGTGAAACAACTGATCTGCAGGACCAGATCGCCGAGTTGCAAGCACAGGTCGATGAGCTCAAAGTCCAGTTGACCAAGAAGGAGGAGGAGCTTCAGGGGGCGCTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.741
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(2.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGAAACTCATGGAAGATCGA
R:
CCCCCTGAAGCTCCTCCTC
Band lengths:
286-1454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]