HsaINT0107973 @ hg38
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36296843-36299042:-
Coord C1 exon
chr22:36298919-36299042
Coord A exon
chr22:36297015-36298918
Coord C2 exon
chr22:36296843-36297014
Length
1904 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GGGCTCCCCCTGCATTGCAGAGC
3' ss Score
6.52
Exon sequences
Seq C1 exon
GAAAAGAAACTGCTGGAAGACAGAATAGCTGAGTTCACCACCAACCTCACAGAAGAGGAGGAGAAATCTAAGAGCCTCGCCAAGCTCAAGAACAAGCATGAGGCAATGATCACTGACTTGGAAG
Seq A exon
GTGAGGGGGTGACGAGCAGGAGGTGATGGGCAGGGGCTGGCGGGCAAGGGCTGGCGGTCAGGGGCCGGCCTGTCTGACCGGAACACCGAGGCCTTCTCAGCTCACGGGTGAGCCTGGGTCACACTACAGCACTGGCTGCTGCCCTTTAGACCTGAGGTCACCAGGTCGAGGGGAGCCGTGTCTGGTGCCTGCGGGAACCTGAGCCTCCAGGCCCCTGTTGCTCTGTGGCTAGATGCCCCCACTGCATGAAGCGTGTTTAGAGAGCTTTGGCATTGCTCTGTTGTGTGCCGTGGGTTTTGGAAGCTTCTGAGACTTCCTAGGAGGCTCCGGGTTTGACCCACAGGACTCACTAGCTCTGTCACTGACTAGCTGGCTCATCTTGCAGCTATGACTTAAGCTCCATGAGCTTTAGTTTTACCTAAAAAGGGGACACAGTGCTAGGGTGTCTGTGAGAATTTCATTAAATACATGTGAACACATATGTACCGTAAAGTCCTAGACGAATACTGCGGAAGTTCATTGCTTGACTTGGGGCAGGGTGACAAATCCTGCCTTGTCTCTGTGTGCCCTCGGGATCTGTGGCAGGGAGGGGGTGCTGGGGTAGAAGCACAGGTCCGTGGCTGTCTGAGGACCCCCAGCCCTGCCCCTTGAGAGGAGTGGACAGCTGGGGGAACAGGGGAACCCCGACTACTCTGGGAACTCTGAGCTCATACCCAGGGGAGGGAGACCAAAACCTGACCACCGGGAGGATTATCCCCAGCTTAGTTTCACAGTCTTGTCCGGCCCCCTCACATCTGCAGGGGATGAGGTGAGTCAGGTCCAGCAGAAGAGAGGTCCGGACACAGAGAGATCTCTTCCCTCACAGACACCCTCCCTCACCTGGGAGGAGCCCGGAAGACTTGGTCATCTAGGAGGTCTAGGGGTTGCCTTGCACCCACCAGATGGACAGACATGAAAGGTTGACACTAATAAGGGCTAACATAGACACGGAGCTGTCAGAGCACACATATGCTGCTGCTGGGACTGCAAACTGGTAGACGGCGTTAGAGAACGATCCGGCAGTCCTAGTGAGGTTGAAACTTAGCATGCCGGTGACCTGGCCGTTCCATCCGTCACTCAGCCGTGTGCACTGAGAGTGAGCAGGATGCTTGCAGCAGCGTTGATCAGAGCGTGCGATGAACACAGCCGCATGCCCGCCAGCTGCAGGACGGGTACATAAGTAAGTTGTGGTGTATTCTCATAATGGAATCCTAGACAAATGTCCTTACACATCTATTCCAGCGAAACTTCACGGGCTACATCTCAAGATCACGTGATGGGGTGGCAAAGGCACGGCAGGGAATAACCATCACGAGGCAGGCACTGTTCTAGGTGCTTTTTAAGATAGTAACTCATTGGCGCCTCACAGCATCCTAATGAAGTAGGCTGTCTCCTTTTGCTTATTATTCAGATGAGGTATAGAAAGTAGCTTTCCCAAGTGACATCACAGAGTTATAAAGCTAGACATAGAGCCCTGACCGTGCGATTCCAACTGTGGAATTCACACAAGGCAGTTCCATTATATAAGTTCAGATTCACACACAATTGAACATGTTTTTTAGAGATACAGACATGGTACAGCCTTCAAGGGAACCAAGGGAATTACAAACACCAGCTTTAGGAGAGTACTTAATTCCTGGCAGGGAAGGACAAGGGGTGAGTTGGAGAGAGACATGCCAGGGGCTAGCAGTTTGCAGTGATGTCCTCTTCCTGCATCCAGGAGTTGGGTGCGAGTGTCTGTGTGTTTGTGATGCTTTAAGCCTGACACACGTTTCATAACGAGTGCTCAGTATTTTGTATAAGTAATTGACACGGAGACAGAACCCATGGCACTGAGGGCTATGTGGGCTCCCCCTGCATTGCAG
Seq C2 exon
AGCGCCTCCGCAGGGAGGAGAAGCAGCGACAGGAGCTGGAGAAGACCCGCCGGAAGCTGGAGGGAGACTCCACAGACCTCAGCGACCAGATCGCCGAGCTCCAGGCCCAGATCGCGGAGCTCAAGATGCAGCTGGCCAAGAAAGAGGAGGAGCTCCAGGCCGCCCTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345:ENST00000216181:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=NA C2=0.638
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(2.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGAAACTGCTGGAAGACA
R:
GAGCTCCTCCTCTTTCTTGGC
Band lengths:
279-2183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development