GgaINT0105098 @ galGal3
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
NA
Coordinates
chr1:53808301-53809414:+
Coord C1 exon
chr1:53808301-53808424
Coord A exon
chr1:53808425-53809242
Coord C2 exon
chr1:53809243-53809414
Length
818 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
TTTGTCCTTACCTGTGTTAGAAC
3' ss Score
5.24
Exon sequences
Seq C1 exon
GAAAAGAAACTGTTGGAAGACAGAATGTCTGAATTTACAACAAACCTAACAGAGGAAGAGGAGAAATCAAAGAGTTTAGCCAAACTCAAGAACAAGCATGAGGCCATGATCACAGACTTGGAAG
Seq A exon
GTGACAATTTTTTATATATTTTAGAAACCAGATCCTGCAGGGGGATTGCTTGTTCAGTTTTGGGTAGTTTCTTGTTTAAAGCTGTGGAATTTCAGTTTCATTTCTAAAGCTTGAGTTTCAATCTGGTTTCTGAGGGGTTAAAAACTAGTCTACAGTGTGTATGCTATTGATTGGTTTGATAGAGCTGTTCAGTGGCTGGGTGAAGGTTATGTGCCTCATCAGCTGAGCCCGTGAGCTAAATAAAAATTCTCTCCAAAGCAGCAGGCCAATGGAGAAGAGAAGCTGGTTCTCTTTCTTCTCCTACTGTGGAAGGGTCTCTACCTTTCTACTTCCAGCAGCATCAGTTTGTCGGGGTTAGTGTGGGTTTTGATGCTCCATTTGTGCAAGTTCTTCAGAGTTCAAGCTAGATGCACTTTATCGTGGGGCTGGCCAGGTCAACGCAGCAGGAGATAGCCTATTTAACTGCAGGAAGAGGAGAGCAGTCCTTGTGTTCAGCATCACTTAATGAGTGCCGTGTGGTGCGGATGTTGGGAGAGACTAGCATTCTGCTTGTTGTTTATTGTTTTTTTACAATGAAATGGGGAAGGAGGGTTGAATGTAAAATGAGGGAGAAGAAAATTGCACATGTATCTTTTAAGTGCAAAATATGCGAGCCATCTGCATTATCCTGACAGAATAATGCACTCCAGCTAGTTTTTGCAGTTGTATTACCAGGAAAGATATTATTGCCTGAATAGCTTTATTTTCTCTGCCTTGCACAATGTTCTTTGAATGACTTTGTGTCATTGTGCAACTTACTTTGTCCTTACCTGTGTTAG
Seq C2 exon
AACGTCTTCGACGTGAAGAAAAGCAGAGGCAAGAATTGGAAAAGACTCGTCGAAAGCTTGAAGGAGACTCCAGTGATCTGCATGACCAGATTGCTGAGCTGCAGGCTCAGATTGCAGAACTCAAAATACAGCTGTCCAAGAAGGAAGAGGAGCTGCAGGCAGCCTTAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.638
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(17.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(17.8=74.1),PF0157614=Myosin_tail_1=PU(2.8=41.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGTCTGAATTTACAACAAACCT
R:
CCTGCAGCTCCTCTTCCTTCT
Band lengths:
262-1080
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]