BtaINT0097409 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75104234-75105836:-
Coord C1 exon
chr5:75105692-75105836
Coord A exon
chr5:75104441-75105691
Coord C2 exon
chr5:75104234-75104440
Length
1251 bp
Sequences
Splice sites
5' ss Seq
CGGGTGCGT
5' ss Score
7.91
3' ss Seq
CTTTGCTTCTCCCCTCGCAGGTG
3' ss Score
12.65
Exon sequences
Seq C1 exon
GTCCAAACGTGAACAAGAAGTGAACATCCTGAAGAGGACCCTTGAGGATGAGGCCAGGATCCATGAGGCCCAGATCCAGGACATGAGACAGAAGCACTCGCAGGCCGTGGAGGAGCTGGCTGAGCAGCTGGAGCAGACGAAGCGG
Seq A exon
GTGCGTGGGCCCCCTGGGACTGGCTCCGTGAGGCTTGGCCACTGTGGGCCGGGGGGAGGGTTGGGGGACCCTCGCGTAGTCCAGGCTCCAGCCGTTCCTGACTGTGTGAGTTGGGGGCGCATACAGGTCCATCTCTGCTTCAGTTTCCTCTTCTATGAGAGAGGCTAGTGAGAGCCCGTTTCAAACAATTACATGAGAATTGGAGTTGGTAACATGTGACAGTGCATAGTCGGTAAGGGCTCAGTAAGTTGTTCTAGTCTTATTATTACCATCATTATCCTGTTCAACACCCTGCCAGACTAGAAAGTGTCATGGAATTGGAGTGACTCTGAAGCTGAAGTTTCAGAGGGCCATTGCGTCCCTTTTCTGAAGCCCAGCCCTTCTCTAGAACACCTCCAACACATGGTCAGCTGGAATCTTCAGGGAGAACCCTGGGGATGTTGACCCGGCTGGTTTCTCAGCCAGGGGACTGTGACCAGGCAGTTCCTGAACAAGCCCAGTCCTGCCTCCTGTGGTTTCCAGCCCACGGCCACCCTTGTTGGCAGCCTGAGAAGACAGAGGCTCTTCTGCGTGGCAGCCTGTACAATATTTTCAGAAACATGCCTTGTTCCTCTGTTTCCCTTTGACTTCCTCCTGGTTCTGGGCAGGTTGAAGCCTTGCCTTTTCCTCTAGCTGTTTTCACTCAAAAAGCTTTTTGCATGCACTTGGGGTCCAGTTTACCCTTGAACTTGCCTTTGATACTGTGACTGGCTTGATATAGAATAGATTGGAATTGTGTTTGTTCTGTAAACTTGGCTTTTATATCTTTTGGAAGAACATTTCAGTGTTACGGTAAACATCAAATTTCTAAGAGGCTTTCTTGGAAGTCTAACTATGAACAATTATAATTTCCCTAAGCTTATAAAAATAATTCTAAAATCTTAACATCAGCAATGACAGTGTCTTGCCCTTGGACATTCCCTGTGCGGGAGGCCAGGCAGGGATGGTTTGAGAGCCAGGGGAGCCGTGGTCCTCAGAGGTGAGGCCACGCGCCAGGCGTCCTGTTCCAGCTGGGAGATGAGTCCACATCAGGCCTGAGCCCTCCAAGTCCATGGCCCTCACCAGCTTGCTGCCCCCTGGACTTGCCCAGTGTCGCTTTTGCTGCCAGGCAGCAGATTCCAGGTCTGGCTCCACCGGCTCTTTGATGATGTTGGGAAAACCAGCCTCATGTCACAGGATCCCCCTTTTATGTCTTTGCTTCTCCCCTCGCAG
Seq C2 exon
GTGAAAGCCAACCTCGAGAAGGCCAAGCAGACCCTGGAGAACGAGCGAGGGGAGCTGGCCAACGAGGTGAAGGTGCTGCAGCAGGGCAAGGCGGACACCGAGCACAAGCGCAAGAAGGTGGAGGCCCAGCTGCAGGAGCTGCAGGTGAAGTTCACCGAGGGAGAGCGTGTGCGCACAGAGCTTGCCGACAAGGTCTCCAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=NA C2=0.580
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGAACAAGAAGTGAACATCCT
R:
CTGCAGCTTGGAGACCTTGTC
Band lengths:
346-1597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]