GgaINT0105101 @ galGal3
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
NA
Coordinates
chr1:53810619-53811491:+
Coord C1 exon
chr1:53810619-53810763
Coord A exon
chr1:53810764-53811284
Coord C2 exon
chr1:53811285-53811491
Length
521 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
ATTTTTTTCCTCCCCTCCAGGTG
3' ss Score
13.3
Exon sequences
Seq C1 exon
GTCAAAGAGAGAACAAGAAGTAACGGTTTTGAAGAAGACCCTTGAGGATGAGGCGAAGACACACGAGGCTCAGATCCAGGAGATGAGGCAGAAACATTCACAAGCCATTGAAGAACTGGCAGAGCAGTTAGAGCAAACCAAACGG
Seq A exon
GTAAGTGGAACAGGGAATGCAAGACCAAAGCAGTCAGCCTCTCTGAAGTGATTGAAATGATAGCTTCTCTGTAGCAATGTCTTAACACATGACGCCAGGTTTCTGATGCACATACTCTTCGTTCCTTGGTAGATCATTTTGCACTATGAAGCATATTACCGTTTTTTTAAATAGTTGCATTCATTCATTTATTCCCATCAGGCATCTTATACTGAATAGCCAAAATATTGTTTAGTTCTTTTCACTGCTAGCATTTGTTGAGCTGTACAACCTTTAATTTGGAAATCTGATGGTGCAAGTCTTTCTCCTTTATTGTTGTCTGCCCTGATTGTTTAACTGTCTCCTTATCAGGTATTCACGTTGTTTTTTTTTCTGAATAAGCAGTCTAAAACTTAGCTGTTACACATGCAACATTAGTTTGTCAGAATAATTTGGAGGAAAAAAAAGCGTAATCACTCACTAGATGTATTCTGCCGTATCTTCAGTCTGAGGTATTTTGCTATTTTTTTCCTCCCCTCCAG
Seq C2 exon
GTGAAAGCAAATCTTGAAAAGGCAAAACAAGCGCTGGAAAGTGAAAGGGCTGAACTGTCCAATGAAGTAAAGGTACTTCTGCAAGGCAAAGGGGATGCAGAGCACAAGAGGAAAAAAGTAGATGCTCAGCTCCAAGAACTGCAGGTGAAGTTTACAGAAGGTGAAAGAGTGAAGACAGAATTGGCTGAGAGGGTGAACAAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.391
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGAACAAGAAGTAACGGTT
R:
ACTTGTTCACCCTCTCAGCCA
Band lengths:
342-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]