DreINT0099738 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7479537-7480047:+
Coord C1 exon
chr6:7479537-7479681
Coord A exon
chr6:7479682-7479840
Coord C2 exon
chr6:7479841-7480047
Length
159 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
ATCTTGTCTGTCAACGCTAGGTC
3' ss Score
8.81
Exon sequences
Seq C1 exon
GAGTAAGCGAGAGCAGGAGGTGGCGGAGCTGAAGAAGGCCATTGACGACGAGACGAGGAACCACGAGTCTCAGATCCAGGAGATGAGACAGAGGCACGGCACGGCACTGGAGGAGATCTCCGAGCAGCTGGAGCAGGCCAAGAGA
Seq A exon
GTAAGAATCAACCAGAGCCCTTTCACTGCTAATATCTGGACTGGAGCGCAGCCAGTTGTCTGCTGTCAGAATGATGTGTTTGGCGTTAATTTCCTCCTCCAGTCTTGGCTTAGACCGAATTCTGGCTCCGTCTCATACTATCTTGTCTGTCAACGCTAG
Seq C2 exon
GTCAAAGGAAATCTGGAGAAAAACAAACAGACTCTGGAGAGCGATAATAAGGAGCTGACCAATGAGGTGAAGAGTTTGCAGCAGGCCAAGTCTGAGTCCGAACACAAGAGAAAGAAACTGGAGGCTCAGCTGCAGGAGGTCATGGCCCGCTTCAGTGAGGGGGAGAAGGTTAAAGGAGAGCTGGCCGACCGTACCCACAAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.957
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACGAGTCTCAGATCCAGG
R:
ACCTTCTCCCCCTCACTGAAG
Band lengths:
256-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]