MmuINT0103232 @ mm9
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68610834-68611958:+
Coord C1 exon
chr11:68610834-68610978
Coord A exon
chr11:68610979-68611751
Coord C2 exon
chr11:68611752-68611958
Length
773 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TCCTCCCTCCCCTCTCCTAGTTC
3' ss Score
8.99
Exon sequences
Seq C1 exon
CACAAAACGTGAGCAGGAAGTGGCAGAGCTGAAGAAGGCTCTTGAGGATGAAACTAAGAACCACGAAGCTCAGATCCAGGACATGAGACAGAGGCATGCCACAGCGCTGGAGGAGCTTTCCGAGCAGCTGGAGCAAGCGAAAAGG
Seq A exon
GTGAGGGCCCTGCCTCGTGCCATGTCCCAGAGACCACTGTCTGCCCTTCTACACCTCACTCCTCACCCTCGCTGTGCCCTCCCACGAGGGCCACCTTCCTCCTCCCTCCCCACAGATTTCCTTGCCTTCCTGCTGTTTTGCCCCTGTGCTCGCGCACGCACACACACACACACACACACCTTTCTCTTTTCTACTTAGCTACAGGCCACCCTTCCCTGTACAGGGTGATGGTGTTAGCATGTTAGTGAGGGTCAGTTTCTGCTGTTTAATACTCTCTCTGAGAGTCCTAACTTCAGCACTGTCGCATAACCTGTCATCGTCATTTAAAGGATAAGGAAACTAAGGCTCAGCACATAAGCTTAGTCACCCAGCTAGTAAGTGGAAAGACAGATTAAAGCCAAGTTCCGTAGCCTCATCTCTAACCTCAGCCAATGGCTCAGAGAAACCCAGCCCCTGGTCCAAACTCAGTAAGTTTGGGAAAATGTTTCTAACAACTTGCTACCGAAGGCACGTAGTTTCTTCCTCTACCCTATATGGACAAGAAGAATGACACGGTCCAATGGGTTCTCAGTCCATAGTTAGTGCTCCAACAACTCACAAGGCGTTACACCCAGAACCCTGGCAACTCAGCACAGTGGGTGTGCTCAGGCATTCCTCCAGCACGTGGTATTGTAGGCTCACTGTGTGCCCACAGAATTCTGCAGACAAAAGCAGTGCTTTTAATGGAGTGTTGTGAGACAGCCGCTGAGGAATTCCTCCCTCCCCTCTCCTAG
Seq C2 exon
TTCAAAGCCAACCTGGAGAAGAACAAACAGGGCCTGGAGACAGACAACAAGGAGCTGGCGTGTGAGGTGAAGGTGCTGCAGCAGGTGAAGGCGGAGTCAGAGCACAAGAGGAAGAAGCTGGATGCCCAGGTCCAGGAGCTCCATGCCAAGGTGTCAGAGGGTGACAGGCTCAGGGTAGAGCTGGCCGAGAAAGCAAACAAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-Myh10:NM_175260:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.918 A=NA C2=0.536
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACGTGAGCAGGAAGTGGC
R:
CTTGTTTGCTTTCTCGGCCAG
Band lengths:
343-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: