HsaINT0107477 @ hg19
Intron Retention
Gene
ENSG00000133026 | MYH10
Description
myosin, heavy chain 10, non-muscle [Source:HGNC Symbol;Acc:7568]
Coordinates
chr17:8402588-8404288:-
Coord C1 exon
chr17:8404144-8404288
Coord A exon
chr17:8402795-8404143
Coord C2 exon
chr17:8402588-8402794
Length
1349 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TTTTCCCTTCCGTCTCCTAGTTC
3' ss Score
9.21
Exon sequences
Seq C1 exon
TACAAAACGTGAACAAGAAGTGGCAGAGCTGAAGAAAGCTCTTGAGGAGGAAACTAAGAACCATGAAGCTCAAATCCAGGACATGAGACAAAGACACGCAACAGCCCTGGAGGAGCTCTCAGAGCAGCTGGAACAGGCCAAGCGG
Seq A exon
GTAAGGGAGGCCCTGCCGTGTGCTGTGGCCTGGAGAAAGTCTGTCGTCAGAGCCACTCCCATCCTATCTGCCCGTTCTGTTCAGTCATGTATTGATTAGGCTCCAGCCTCTGTACGTCACTGAGTGGGCTGCTGGGTACCCAGTTGCCAAGACAGGAGCGGCTTTCAGAAAACACACTGTCTCCTTAGGAAGAAAAGCCAGATGCAAGTGCATGGATCCAGCCACCATCTCAAACCACACAGTCCTCCCCAGTGTCTCTTCTCACTAAACCCTTCTCCCAGTGGCTTCACTCAAAACCCCGAATGGTTTGAAAGTCATTCTTCCCTAACTTGTCTGCTGCCAGTAAGTCACACGTCCTGCCGATGTTCCCCTTCAGGGGTTCCTGACATTCATCTCTCCCTTCTTGTCCTTCCCTGCCTGTGATCTCACCTCAGCCACCAAACACAGTGTTGGCTTTCATTCATTGTTCCCGCTTCTGTATCTCAGACACAGGCTTTCCGTTCTCCTGAAACTTAATTTCATGTGCCCTGTGACTCACGCCACCCTCCTGTGCAGACTGGCCTCCATGACTTCCCATAATCATCCTTGCCTTTGTGACTTGGTTCTTGCTCCAGTTTCTCCATCTTTCTGTTCTTTGCCTAGCCACATGCCACCTTTTAATTTAGACAATGACAATATTAGCATTTACGGAACATTTATGTTTGTGTCAAGTACTGTGCTAAGTACCCTACACGAGTTGCCTTCCTTAATCTTTGCTACAACCCTGTGGCACAGTCTCCTATAATTCCCATTTAAAAGACAAGGAAACTGAGGTCCAGTGGTGTTAGGTAATTAAGCCAGGGTCACACAGCTGGTTCGTGGAAAGGCAGCTTGAAGCCAGACAGTCTGGCCCAGATTCCCATGTGACCACCTTACTACACCCAATCTTGTCCCTGAGGCAGGATGTCATTGGAGATACATCCTGTTGTGGCCACCCCTGCACCAAGGGTGCCTGCTCATGTTAGTAAGTGTAAAACAATTCTTTACACTAACAACACTTTTTTATACAGAGGACAGTGTGAGTGATGACTCTGCAGACAGGACACACCTGGCATGGACAAGGCTAATTACTTAGCACAGTGAGCCCCTAAATATCTGCATCTGCTCCTCGGAGCAGTGTGTACGCGTGTGTTCCTTACGTAGAAATCCTCACACTCAGAGAACAGCAAACATTTTCATTCATTCATTCAACAGATGTTGACTACAGACTCACTGTGTGTTAGGCACAATTCTGCAGACTCAAAAAGCAGTCCTCTGTATGGAGTTTTAGAAAATAACTAGTGAATTATGTTTTCCCTTCCGTCTCCTAG
Seq C2 exon
TTCAAAGCAAATCTAGAGAAGAACAAGCAGGGCCTGGAGACAGATAACAAGGAGCTGGCGTGTGAGGTGAAGGTCCTGCAGCAGGTCAAGGCTGAGTCTGAGCACAAGAGGAAGAAGCTCGACGCGCAGGTCCAGGAGCTCCATGCCAAGGTCTCTGAAGGCGACAGGCTCAGGGTGGAGCTGGCGGAGAAAGCAAGTAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026-MYH10:NM_005964:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.918 A=NA C2=0.522
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGAACAAGAAGTGGCAGA
R:
AGCTTACTTGCTTTCTCCGCC
Band lengths:
342-1691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)