GgaINT0127258 @ galGal4
Intron Retention
Gene
ENSGALG00000001183 | MYH10
Description
myosin-10 [Source:RefSeq peptide;Acc:NP_990805]
Coordinates
chr18:1713704-1715480:-
Coord C1 exon
chr18:1715336-1715480
Coord A exon
chr18:1713911-1715335
Coord C2 exon
chr18:1713704-1713910
Length
1425 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GTTGTTTTTTTCTTTCCTAGTTC
3' ss Score
8.85
Exon sequences
Seq C1 exon
GACAAAACGTGAGCAGGAAGTGGCTGAGCTGAAGAAAGCAATTGAAGAGGAAACCAAGAACCATGAAGCACAGATCCAGGAGATCAGGCAGAGGCATGCTACTGCCCTGGAAGAGCTCTCTGAACAACTTGAACAGGCCAAAAGG
Seq A exon
GTGAGCAGAAAATGAAATGTATTATTCTGCTTCTGGGTTTTACATAGGTAATGTAACTGTCCTAGGACCTTCTGCTCACATCTGCAGAGCTAAATTATCTTTGTACGTACGTTACTGTTGTAATTGAACCAAATGTATTGCATGTGAATATATTGAAACTCCTGGATTTGGCATCTGTGTGAAAAGCCTTGTTCAGTCTTGGAAGAAGTACACCTAGAGATAAAATCACGTGGGAGTTATCCAGCAATCCACATGCTTATTTGGTGAAAAGAGTTCACAGCATGAGTGATCAGCAGAATGCTTCCAAATATGGACATTGTAGCATCAGCACTCAGAAATAATGAGCTCTGAGTGCAGGTATTGTGAAGTTCTTCCAGCCATTCCAACTCTGTACTTGTACTGGGAACTCCAGTGCTAGCTATGTGTGGAGCATCTGGCCCAGCTGTACAGCTATATTGTCTTCTGTGGTAACCACCACCAGAGCAGGTAGGAGGAGGCACTCCTTTGTTATTAGCCATAGGTAGCATTATTTCTGCTAGTGGGTGTTTTGTTCAAGAGCAGAATTATTCCAGCACTGCCAAAAAGAGCATTTAGCTTCTGTGATGGCAGCCTTGGTCATTCACAAATATATCTGTGGGCAGTTCATAAGCAGTAGCCCTATTTTTATACAGGGAATAACTCACAGAATTTCTTAACTGAAAATACTGAGTGAGAAATGCAGCAGTTAAACTGCTGGAAAATGAGCTTTTTTCACTTGAAGATCTTATATACTCTGCTTCTTGTTTAATAAATGTCGACAATAGAGAGTGAAAAATGGAAAAGTACCCTGCAGTCTTAAACATGGGTCCTCTGAGAAAATGATGTCAGTTTTGGTGAGGATGGAACTGGTAGAACTAGTAGTGAGAATGGAACATAAAAATAATTGGCTTAAGAGATGTTTCAAAAGATTTTTTTTGACAAATGTCAGTGCAGTGGTGGAAAGTGCTTTGTTTTGCACTTCCAGGCTGCTATGCCTACTAAATTCAGGGCAACTTCAGCTGCTATCTTTCCTTTTATTTCTGTGAGATGAGCCATGCTGATCTGTTAATGGGCACATTCCTTCCTACTTACACTGTGACTCAAACAGTCATTTTACAGCACTGATGTCCCAGATCTTACTGAAGTCACAGAAGAGTCTTGTGGTGCTCACTGATACCTGTAATGTCTGAAAGTGGATTAACTTGCATTAACTCGTTTTTGTCCAACATACACAGAATGTTACCTGGCAACATTTTAAACACTCTACTTGCAGCTTGCTGAGTACTTGTTTTATCTTTGAACTTGTAAAGTGGATTTGTTGGACTGGTCTATTTTTTTTTAGCAGATTCCTTTATTGATATATGTAACAAACTGTTGAATTTCTTTTGTTGTTTTTTTCTTTCCTAG
Seq C2 exon
TTCAAAGCAAACCTTGAAAAAAACAAGCAAGGCCTGGAGTCTGACAACAAGGAGTTGGCCTGTGAAGTGAAGGTGTTGCAGCAGGTCAAGGCAGAGTCTGAGCATAAGAGGAAGAAGCTTGATGCTCAGGTACAAGAACTGACTGCTAAGGTCACAGAAGGCGAAAGACTGAGGGTGGAGCTGGCGGAGAAAGCTAACAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=NA C2=0.415
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(18.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACGTGAGCAGGAAGTGGC
R:
TTGTTAGCTTTCTCCGCCAGC
Band lengths:
342-1767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]