RnoINT0096321 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55388547-55389712:+
Coord C1 exon
chr10:55388547-55388691
Coord A exon
chr10:55388692-55389505
Coord C2 exon
chr10:55389506-55389712
Length
814 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TCCTCTCTCCCCTCTGCTAGTTC
3' ss Score
9.37
Exon sequences
Seq C1 exon
CACAAAGCGGGAGCAGGAAGTAGCTGAGCTGAAGAAGGCTCTTGAGGATGAAACTAAGAACCACGAAGCTCAGATCCAGGACATGAGACAGAGGCACGCCACGGCACTGGAGGAACTCTCTGAGCAACTGGAACAGGCTAAGAGG
Seq A exon
GTGAGGACCCCGTGAGACTCACCTGCTGGACGTCCCCTCTAGCTACACCAGCTCACTCGCTCCCAGCCTCTGTGGAGCATTGCTGAGCCTCTCGGCTGAGGCCAGAAGCCACAGGACCACTGCCAGCCCTTCCTGCCCTTCCATACTGCTCTTCACCCCGCTGTGCTCTCCTCGGCCTCCTACCCTCCCACTCGGCCTCCTTCCTCCTCCTCCCCCACACACTTCCTTGCCTTCCTGCCATTTTGCTTCTGTCCCTCTCCTTTCTCTTTTCATCCTTCCCTGTGCAGGGTGATGGTGTCAGCACGCTAGTGAGGGTCAGTCTCTGCTGTTTAGTACTCTGAGAGTCCTGGCTTCAGCACTGTCGCATAACCTGTCATTGTCATTTAAAGGATAAGGAAACTGAGGCCCAGCACATACGTTTAGGTCACCCAGCCAATAAGTGGGAAGACTGATTAGAGCCAAGTTCCATAACCACAGACAGAGCCCTGGGTAGCCTTGTCTCTAACCAGAGACCCAGTCCGTGTTCCAAACTCAGTAAGTTTGGGATAACGTTTCTGACAACTTGATACTGAAGACACGCACCGAAGGCACGCAGTTCTTCCCTGTGCCCTGTATGGAGGAGAACCACAGTCTGATGAGCGGCTCACAGCCCATAGTGCTGCAACAACTCACAAGGTCTCCCATAGTGGGAGTGCTCAGGCACTCCTGCAGCGCACACGTGGTGTTGCAGGCTCACTGTGTGCCCACAGACGTCTGCACTTTTATGGAGTATTGTGAGACAACCGCTGATGAGTTCCTCTCTCCCCTCTGCTAG
Seq C2 exon
TTCAAAGCCAATCTGGAGAAGAACAAACAGGGCCTGGAGACGGACAACAAGGAGCTGGCGTGTGAGGTGAAGGTGCTGCAGCAAGTCAAGGCTGAGTCAGAGCACAAGAGGAAGAAGCTCGATGCCCAGGTCCAGGAGCTCCACGCCAAGGTGTCAGAAGGTGACAGGCTCAGGGTAGAACTGGCCGAGAAAGCAAACAAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.939 A=NA C2=0.609
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGCAGGAAGTAGCTGAG
R:
GTAGCTTGTTTGCTTTCTCGGC
Band lengths:
343-1157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]