HsaINT0107976 @ hg38
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36294092-36295076:-
Coord C1 exon
chr22:36294932-36295076
Coord A exon
chr22:36294299-36294931
Coord C2 exon
chr22:36294092-36294298
Length
633 bp
Sequences
Splice sites
5' ss Seq
CGGGTGCGG
5' ss Score
6.49
3' ss Seq
TTTGCTTTCTTCCCTGCTAGGTG
3' ss Score
12.07
Exon sequences
Seq C1 exon
GTCAAAACGTGAGCAGGAGGTGAACATCCTGAAGAAGACCCTGGAGGAGGAGGCCAAGACCCACGAGGCCCAGATCCAGGAGATGAGGCAGAAGCACTCACAGGCCGTGGAGGAGCTGGCGGAGCAGCTGGAGCAGACGAAGCGG
Seq A exon
GTGCGGAGCCTCCCTGAGACCGCAGGGGGAGGGCAGGGTTCCCCGTGCTGGGCCCACAGAATCCAAACCAGTCCTGCAGAGCAGTTGCAGGGTTCTACCCAACTGCCTGGTTCTGAGGCCAGGCTCCCCTTCTAAGGGGCTTTGTGACTCGTGCCTCAGTTTCCCTGTTCATAAGGGAGGATTATGGTATGTCTGTCTCGTGATTATTTGAGGGTGAAAACATTACATCGTTACTTTGAACATCAGACTTCAGACAGGCTTTATTGGAAGTCTAACTGCAAACAATTATAGTTCCCCTTATTGCGTTACAAATATTGCTAACATCTGCAACACCAATGCCATGCCCTAGAACCTGGCCTCTACCCAGGGCAGAAGGCTGGGCAGGTATTATTTTAGAGATGGGGAAGCTGTGAGATGTCCTAAGCAGTGAAGACAGGAACCAAGTGTCACCCACCAGCTAAGAGAGAAGAGGACAGGACAGATGAGGCCCGAGCCGTCTGAGTCCAGGACGCAGGCACACCGTCGTCAGGGCTGCAGAAGCAGCGATGTCTGGATCTAGGGTCCAGTGATGATAGACCAGCCAGCCTTGTGTCAGGAGGCCCCCACTCACGTCTTTGCTTTCTTCCCTGCTAG
Seq C2 exon
GTGAAAGCAAACCTCGAGAAGGCAAAGCAGACTCTGGAGAACGAGCGGGGGGAGCTGGCCAACGAGGTGAAGGTGCTGCTGCAGGGCAAAGGGGACTCGGAGCACAAGCGCAAGAAAGTGGAGGCGCAGCTGCAGGAGCTGCAGGTCAAGTTCAACGAGGGAGAGCGCGTGCGCACAGAGCTGGCCGACAAGGTCACCAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345:ENST00000216181:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.939 A=NA C2=0.522
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGCAGGAGGTGAACATC
R:
CTGCAGCTTGGTGACCTTGTC
Band lengths:
345-978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development