BtaINT0097624 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56461327-56461605:+
Coord C1 exon
chr20:56461327-56461427
Coord A exon
chr20:56461428-56461538
Coord C2 exon
chr20:56461539-56461605
Length
111 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
CCTTTTTAATCTTTGCACAGAGA
3' ss Score
6.79
Exon sequences
Seq C1 exon
GTGAATCACTTTGAGCAGTTCAATATAAACTATGCAAACGAGAAACTTCAGGAATATTTCAACAAGCATATCTTTTCTTTAGAACAACTGGAATATAGTAG
Seq A exon
GTAAGCACTCACTGAATTGCGTTTCAAAATGTTTAAGAAAATGAGTCCCTACGTTGGATAGTTTTGAAGTGATATTTTACTACAACCTGGACCTTTTTAATCTTTGCACAG
Seq C2 exon
AGAAGGCTTAGTGTGGGAAGATATTGACTGGATAGACAATGGAGAATGCCTGGACTTGATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126:ENSBTAT00000026812:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATCACTTTGAGCAGTTCA
R:
CAATCAAGTCCAGGCATTCTCCA
Band lengths:
163-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]