MmuINT0103864 @ mm9
Intron Retention
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25666156-25666416:+
Coord C1 exon
chr15:25666156-25666256
Coord A exon
chr15:25666257-25666349
Coord C2 exon
chr15:25666350-25666416
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCCTTCTCTTCTTCCCGCAGGGA
3' ss Score
13.41
Exon sequences
Seq C1 exon
GTTAACCACTTTGAGCAGTTCAATATCAACTATGCAAATGAAAAGCTTCAGGAATACTTCAACAAACACATTTTTTCCTTAGAACAACTAGAATATAGCAG
Seq A exon
GTAAGCACACAAGAGTCCACTCCAAAAGACAATTGTTTTTTAAAAATCAGTAAGCAAATCTTGATTTCATGTGGCCTTCTCTTCTTCCCGCAG
Seq C2 exon
GGAGGGATTGGTGTGGGAAGATATTGACTGGATAGACAATGGAGAATGTCTAGACCTGATCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-Myo10:NM_019472:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAACCACTTTGAGCAGTTCA
R:
TTCTCGATCAGGTCTAGACATTCTCC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: