RnoINT0096742 @ rn6
Intron Retention
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:77998559-77998836:+
Coord C1 exon
chr2:77998559-77998659
Coord A exon
chr2:77998660-77998769
Coord C2 exon
chr2:77998770-77998836
Length
110 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CCTTTTTCTTCTTCCCCCAGAGA
3' ss Score
11.56
Exon sequences
Seq C1 exon
GTTAACCACTTTGAGCAGTTCAATATCAACTATGCAAATGAGAAGCTTCAGGAATACTTCAACAAGCACATTTTTTCTTTAGAACAACTAGAATATAGCAG
Seq A exon
GTAAGCACACAAGAGACCACTCCAAAAACAATTCTTTTTTAAATTAGTAAGCAAATTTGTGTGACAGGTGTATCTTAATTTCACGTGGCCCCTTTTTCTTCTTCCCCCAG
Seq C2 exon
AGAAGGATTGGTGTGGGAAGATATTGACTGGATAGACAATGGAGAATGCCTAGACTTGATCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161:ENSRNOT00000014022:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAACCACTTTGAGCAGTTCA
R:
CGATCAAGTCTAGGCATTCTCCA
Band lengths:
163-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]