GgaINT0096733 @ galGal4
Intron Retention
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75573195-75573607:+
Coord C1 exon
chr2:75573195-75573295
Coord A exon
chr2:75573296-75573540
Coord C2 exon
chr2:75573541-75573607
Length
245 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCTCTCCTTATTTTCCTTAGGGA
3' ss Score
9.3
Exon sequences
Seq C1 exon
GTGAACCGTTTTGAACAGTTCAATATTAACTATGCAAATGAAAAGCTCCAGGAGTATTTCAATAAGCACATTTTTTCTTTGGAACAACTGGAATACAGCAG
Seq A exon
GTAAGAGTTACAGGTGAAATCTGAAAGAATTTTGGAAACAGAAATATTCACCTGAAATTTAGGTCACCAGAAATTTGGGTTACTTCAGCTTACTTTGAAAATATCTTATTCTGTGACTATGTTTTTTTAAAAGCAAGCTGATTTCACATTAGTTTGCAAGACAAACCCATCATCTCCTCCCATTTGTGTATTTAAAATCTTTTCCCTGTAGTTATCAATAAAAAGGCTCTCCTTATTTTCCTTAG
Seq C2 exon
GGAAGGTCTGGTTTGGGAGGATATTGACTGGACAGACAATGGCGAATGCTTGGATCTTATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954:ENSGALT00000021128:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTATGCAAATGAAAAGCTCCAGG
R:
TTTTCAATAAGATCCAAGCATTCGCC
Band lengths:
140-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]