BtaINT0097628 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56463657-56466607:+
Coord C1 exon
chr20:56463657-56463739
Coord A exon
chr20:56463740-56466498
Coord C2 exon
chr20:56466499-56466607
Length
2759 bp
Sequences
Splice sites
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
3' ss Seq
CCTGCTCTTTGCTCACACAGATT
3' ss Score
9.15
Exon sequences
Seq C1 exon
GTTCAGTATGACGTGCGGGGCATCTTGGAGAAGAACAGGGATACCTTCAGGGACGATCTTCTCAACCTTCTGAGAGAAAGCCG
Seq A exon
GTGCGTTGGTCTCTTTCCTGAGCTGTCAGAGTGCTGTCTGTGCAGATGCTTTTAATTCACACAGAAAAATTTAATATGGGGGCAACTTGATGTAGTGTGTTCTTCCCTGGGCAATATTTGATTAATAAAGTGATATATAAATGGCCTTAGTGGTAGTGGCTACCATTTAATGAAGTGGCATTGGAACACCAGACCCATAGATTAGATACTTTTATTCATCCTGTTATGCAGGTAAGGAGATTAAGCCTGGTGTGGTGAAGTGACTTGCCCAGGATTCTTCAACTAGATTTGATCTGTTCTGCTTGGTTCAAGAATCTAAGATTTTAACCAGCATGACCTAGTTTCTTCAGGTCTTGTAGGACCTTCTGTCTCTAGTTAGTGTAAAGGTTATCAAGAGAAATAAACAAGTATTCAGCTAAAATTACCCATTCGTTTATTCATTCATGAATTGTAAATTCACACCATTAAATCAGTAATTAAGGAAAATATGCTGAAAAGTTTTGATGATGAATTCATTTGTTTGTATATATTAAACCAGGAGGCTTCCTGCTTTTAGGAGGCTTTGTGAGAGAGAAAGAGGGGAAAACAGCCCTTAAAGTCATCAATATGTGTCTTAGATCCAGTGTGAATCTCTAACACAAATTTTCAATATCCTAGGAAGGAAAGTAGCACAATCAGTAAAAAGCTGTAATACTTTTAGAAATGAAAGTCCCAGGTGGCTACCCTGTCGCTTAAATAGCTGTGAACCGGGGTGAAGAGAACCCATCTTAAGTGTCAGCTTAGAAGCCCAGGGTGGAAGTGGGTGATCTTTCAATGTGTCTTAACCCTCCTCTATGAAGATTCCCTAATTACAACCTTGTCGGCTATTTTAATTTTAGGTGCATTTTCAGACCTGTAAAAATGGTGATGTTTTAACCATAGCAGATTACCTCTCTCTCAAAGGAAATTTAAATCAATCCATTTAAGTAAAAGCGGGGTCTTGAGGTTAAATGAACATTTTGTTATGAGCAGGGCCGAGGCTTGGAGCCCAGCAAGATGGCCTTCCACTGGTTGCCGCTATCATAACATTAAGTGGAATTAAAGGCAAGAGTGTTGTTTTAGCCCAGGTTTCTCTCTGCAGATGGAGGGGCTTGGTGTCTTTGCCTCTCTTCTCTCTTTTGCCTTTGGCATCTGTGACATTTTGCACTCCGTCTCTTCAGTCACATCCAACTCTTTGTGACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGTTGCTATTTCTTTGTCCAGTGGGACATTTTAATGGCACCCAAAGCTTTTCTCCAAAGCGCTCAAAGTACAGAGAACTTCAAAGAGCGAGAATGAACGAAACATCACCTTAGGACGAAAGTGAGAGAGTTGAACAGAATGAGAAGTGATGAGGGAAGCACTGGCATTGTCTCCTTGATGGGGTGCGAAAGCCAGACTCTTTCTCCTGGTTCTAGCAAAGACATTACCCCCTACACCCCTGACCCATGGTTTTTATAGCCCAGAACATCTTCCATTCAAAGAAGATCAAAAAGGTCCTGAGGATTTCCTTAGTGGTGCAGTGGATAAGAATCCGCCTGCCAGTGCTGGGGACATGGGTTCAGTCCCTGGTCTGGAAAGATTCCACCTGCCTTGGAGCAATTGAGCCCTGCGCTAGAACCCTCGAGCCACAACTGCTGGACCAGCACACCACAACTACTCAAGCTTGCATGCTCTAGAGCCAACGAACCGCAACTGCTGAGCCTGAGGGCAGGAGGGGAAGGGGACGGCAGAGGATGAGATGGCTGGATGGCATCACTGACTCAATGGACACGGGTTTGGGTGGACTCCAGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCTGCGGTTCATGGGGTCGCAAAGAGTCGGACACGACTGAGCGACTGAACTGAACTGAGCTTGAGTGCTGCAGCTTATGAAGCCCGTGTGCCCCAGAACCTGTGGTCCGTAAGAGAAGCCACCGCAACGAGAAGCCCACACGCAGTAGCTGGAGAGCAGCCCCTGCTCGCCACAGCTAGAGAAAAGGCCTCATGGCAAGCAATTAAAATAGTGCAGCCAGAAATACAAAAAAAAAAAAAAAGCTCCTTGAAAAGTCTTCTACTTTGTCCGTAGTGGCAATAGATTTTCCAGAACTTTTTAATAACAACAACAGTGATCATCACCACTTAGGATGGGCCAGGCGTCACACTCAGCCTTCTGCCTCCATTCCTCATTTCATCCTTACCCCAGCTTCCTAGGATACATCCCCAAATGACTCCCATTTCCAAGTGAGAAAACAGGTGTGGAGAGAGACCAGCATCATGTCCGAGTCATACAGCTAGGAAGAGGGGACGGCAGGATTGAACCCAGGTCGGTCTCACTCCTGCCTGGTGCCCTTCCACCTGTTAACTGACTGCATCTTCGCCATGCCGAGCTGCACAGGACAAACACTTCCCTTCCACTGGGCTGCAAGGCTCAGCTCCGGAGTGGCTGGTCACGTGGGTCATTTTCACCATCCTCTTCTCGCCGGCAAGACTCCAGCACTCCGAAGCGGCCACATCTGCTTTCAGTGCCTGAAGCTCCTGGGTGGTGGTGGGTGTGTGAAATCTTGGAACACTGTCTTAGCTCTTGCAGGCCTTGGTGTGTTATTTTCAGTGGGAACCTGCATTATAATTACAGTGATCAAGCACCTAATAATTGGGTGTGCACCCCTCATGGCCCTCCTGCTCTTTGCTCACACAG
Seq C2 exon
ATTCGACTTCATCTACGACCTCTTCGAACACGTTTCCAGCCGCAATAATCAGGATACCTTGAAATGCGGAAGCAAACACCGGCGGCCCACGGTCAGCTCGCAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126:ENSBTAT00000026812:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.270
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]