RnoINT0096746 @ rn6
Intron Retention
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:78000853-78003849:+
Coord C1 exon
chr2:78000853-78000935
Coord A exon
chr2:78000936-78003740
Coord C2 exon
chr2:78003741-78003849
Length
2805 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAC
5' ss Score
7.48
3' ss Seq
CCTCTGCTTCCTTCACACAGATT
3' ss Score
9.72
Exon sequences
Seq C1 exon
GTGCAGTATGATGTCCGAGGCATCTTGGAAAAGAACAGAGACACGTTCAGAGATGACCTTCTCAACCTGCTCAGGGAAAGCAG
Seq A exon
GTATACAATTTCTCCCCCATGAAGTCATTAACAAGCACATTACAGTCCGTAATTTGTGAACAGAGAACAGACTGCTATTGTAGAAGCACTTGACTTAGCTTCTTCTCCAGTGACTTAAGGGATATACTATGGAAGCAAGGAGTTCCCATAATGAGGAGTTGGATACTCTTCATCTATTCTGTTAATACTCGTGAGGAAACCCAAACGGGAAGCATCAGTGATTTGCTGGTGGCCAGAGGCTAAGCTTACCTATCAAGTATGTTTGGCTCAGGAACCTGATCTTGACCAGTCCAGCCTGCTTGCCCACTACAGTCATTGAGCTGTTTTAATTTCAGGTCTGGTTTTTATAGGATCCTGTTTGGCCTTGTTGTGAAATGTCAAGAAAATTAAGCAAGTATTAATGCAACCAGAATTAGGATTGTATCATTCATTCATTCATTCATTCATTCATTCATTCATTCTTTCAGGAATTGTAAGTTCACACCATGGAACCAAGAGTTAAGGAAAACATAGAAAATTTTAATGATTAGTTTAGCTATTTGTATGTAGGAAGGCAGGAAGTGTTCCCCATTGTCCAGCGACTTGGTAAAAGAGACAGGATTTGAGACAAAGCCCTCCCTTGTAGGCTTTTCAAACCTTTGGAGGATATAGCATGAATATATACAGAAATAACTTTTAAGGAAGGAAGCCAACAATTGTTAAAAGGCTGCGCTATTTCTCGGAGCGTAAATACCAGGTGGTCATCCTGTCATTTAGTCAGCCATGAATGGGGGTGAAGGGAGCCAGGCTGAGCTCGGAATCCGACGCGCTTGATCTTTACGCTTCTGTTCTCGCTCGTGAACATGCACACTGCCTAAACTATTCTCAGCTGCTTCTATTTGTAGATGAATTTTCAGACCGGCAGAAAATACAGGATGCTGGAAAATGCCACAGCATGTTACCTGACAGGGCTGTCTAGGCTGTTAGCTTTGAAAGGATGCATTTCAGCACAAGCTGCCTGTTGGTCTGAAGCGGAGGCCCTTTGTTGCGGTGGAATGCTGTAGAATTAGAATGAAGAGCCGCTCACAAAGATCACAAGCTGTCTGTCCTAGTGTTAAAAGGGTGAATTTGCTGCCACAGCCTGGGGTTCCCCTTTGCAAATGGGGGAGCCTACTTCCCTTTCACCTTTGATGACTTTGACCTTTTAATGGAATGCAAGCTGTTCTCTCAGCATTTAAAGCAGTTGGGGTACAGAGCAGCCCGAGGCACAGGGAAGAATCCTGCCACCTCCACCTTGAGATACATTTGGTGGGTGGATGGCCTTTCTGCCTTTGCCTGTGGTGCCTTTTACTTCATCAATAGTGGTGATGGTTTAATAAATTCACTAGCTGCCGTATCAGAGCTGCGATCCGCTGACCATGGCTCAGGCACTGTGCCTCTAGCCTTGTACACATCCCTGTTGTATTCTTTCCCGTTGTTCCAGATGGGCCATCTGAGGCCTAGAGAGAGCAATGGGGGCATCGTACTTATTTATGATGCAGCTACGAGGTAGAAGAGACAGGATTTGAACCTGTGTTCCCCTCTCTGTACTAGCACTCTCCCAACGTGTGTCCGATTGAGTCTTCACCACAGTGCACAGTGGATGTAACGTACCAGCTATGGATCTGTTAATTCCTCTGTAGAGCTGACCAACTATTGATTGGAAATCTTTGTTAAAAATAAAACAGAGGGGGCTGGAACACCCGACACTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCACATGGTGGTTCACAACCATCTGTAAAGAGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATATAATAAATGAATAAATCTTTAAAAAAAAAGAGTTAGGAGGGAGCCCTTTCCTTTTTAGAAATAAAATAAAATAAAATAAAAAATAAAACAGAAACAGAGCCCGCGGCTGTGCTGAACATGTCGTTCCTAAACCGGTGGTTATCAAACTGTGGGTGGTAGCCCCTTTGGGGGTTGAATGACTGTTTCACAGGGGTCGCCTGAGACCATCAGAAAGCACAGATATTGACATTACAGTTCGTAAGAGTAGTAAAATTATAGTTTTGAAGTAGCAACAAAAATAACTTTGTGTTCGGGGAGGGTCACCGCAACTGTATTCAAAGGTCATCAGGAAGCCGAGAACCACTGCCTTAAAGAGTAACACATAACATGTATTTAGGGAGAATGTCCTTTGTGTTGTTATTGTAAACAATCTAGACATGGTTTAAGGCGCATGGGAAAATGTGTGTAGGTTCCATGCAAACAGTGGTTTATTATAAACAAAGGACCTGAACATTTTGGGTATTGGTTTCCATGAAAGGTCCAAGAACTTGATCCCCCTCCACCCCAAGAAACTACTGTACCAAATTGTGCAGATGAGAAAGTGAAGGCTGCGGGGGTTAGGTGGATTTATCTCCAGCCTTTCCCTCTCTGAGACCCCTTCCCAGGCCGCCATCTTTCTCTCTTTGTTCCACCCAACCCCCCAGATAGAGTTTCTCTGTGTGTTCCAGGCTGTCCTGGAACAAGGTCTATAGACCAAGCTGGCCTTGAACTCAGAGATTTACATGCCTCTGTCCCCCAAGTGCTGGGATCAAAGGCGTGCGCCACCACTGCCAGGCCCGGCTGAACCTTCTATGCTCTTACAGCCCTTCAGGCCCCAGTGTATTATTTAATTACCATTGTAGACGTGCACTGTAATTACGGTGACCGGGCACCTGACAATCATGTGTGCACAGCTCACAGTCCTCTGCTTCCTTCACACAG
Seq C2 exon
ATTTGACTTCATCTATGACCTCTTTGAACACATCTCCAGCCGCAACAACCAGGACACCTTGAAATGTGGAAGCAAACACCGGCGGCCTACTGTCAGCTCACAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161:ENSRNOT00000014022:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]