GgaINT0096737 @ galGal4
Intron Retention
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75576655-75578203:+
Coord C1 exon
chr2:75576655-75576737
Coord A exon
chr2:75576738-75578094
Coord C2 exon
chr2:75578095-75578203
Length
1357 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TATTTTTCCTCCTGTTTCAGTCT
3' ss Score
9.17
Exon sequences
Seq C1 exon
GTCCAGTATGATGTCCGGGGGATCTTGGAGAAGAACAGAGATACATTTAGAGATGATCTCCTGAACTTGCTACGTGAAAGCAG
Seq A exon
GTACATTTCTGTGATTATTATTATTATTATTTTAGAATATCATGTTAAAAGGTATCATATCAGCTAGTTTTGCTAGGGTTTGGCTATGCTGAATGTTGCATAATACTACAGAGTTGAAATAAATAAGTATTAAATCTGGCTGTAATCAGTTCTCACTGAGACAGGCTTTCCCACATTGTACAGTACTTTGCTCCTGTTCAATACAGAGGTGCATTAGACAGCCAGCTTGCTACTAGATAAGTAAGGATACTGAAAGTAGTTGATGATATTTGACTGTTTCAGGATGCCTCACAGGCAGGTGATTGCATGATTTTTGTTTCACATATAGCTCAATTTCCTCGTATTTCTGGCATTTCCTAGTTTGGTTGAAAGCTTAGTGTTCGGGACCTACCACAGTGCAAATTAATTGCGATGGTTTAAAAGGGAAGATTTCCAGAGCTAGTTTATATTACTAGAATTTTACTCCTGGATGTCTTTGCTACTCATGTGCCTCCTATCATTTTATTGTGCAAGGTCTCAAGATCCTTACAGTACTTTGTGAGCTGCAGCAAGACCACATGCCTTTCTGTAAAGATTTGATTTAGACTCCAGGACACACACAGGGCTCCCAGGAGAAGAGGGAACGGAGCCCAGGTTGTTTCTGTTCTTAGCTGCTACCTTAGTCCATCTTGTTGTCCTGCTTTGCTCTGGGAGTTGTTTGTCCCAGCTCTTCTGTGCAGGAGGAGCTATTAGTGAGAATTTCCTTCACTGTGTTCCTTGTTCTATTTTTGTGATGTGTCTGACATGACAGCTGTCGACTGAAGAATGGAGGTAGAAGTAGCAAATGAGTTAAGGATGCAGAACCTGTTTTTGCTCTTGCATCAATATCTGTATGGGAGTTAAAGGATCTGTGTTTCTGTAGAAGTGGTAGGAGGGGGATACCAAACTTGTAGTGTGAAGAATGGCATTTACAGCTAGCATCTGAAAGTGAAGCTCATGTGGGTAGCTGTTTCGTGCTGTGGCCCATAACAAATAGGAATTCTTGGATTTTAGTCTTTAGGTACTCATTACGGTCCCTTGGAGTTTTGTTTCAGTGAATAGAGTAAAATTCAGTAAAGATTCTTCACTCTTCATTTCCCTAATCGTGTGCTGGGAAAGAAGAAGGAAGAACCTCCTTGTCATGTTTTGGTTTGTTTTTGTTGGTGTTTTTTTTTTGCTCCCCTGAATAAATTCTGCAAAGGTGGAGTCTGAGTTTTGGAGAAAATTGGTAAGTATTGTTTGCATAGAGGAGTCGCTTTCAAAGAGACAGAGCTTACTCTGCATTTTATAGTTGCAAATCATATACACTTCAGAGATTTTATTTTTCCTCCTGTTTCAG
Seq C2 exon
TCTTGATTTCATCTATGATCTATTTGAACACGTTTCAAGTCGCAACAATCAAGACACTCTTAAATGCGGAAGCAAGCACAGAAAACCCACTGTCAGTCTACAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954:ENSGALT00000021128:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.162
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGTATGATGTCCGGGGG
R:
AGACTGACAGTGGGTTTTCTGTG
Band lengths:
182-1539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]