BtaINT0097656 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56446238-56447051:+
Coord C1 exon
chr20:56446238-56446362
Coord A exon
chr20:56446363-56447037
Coord C2 exon
chr20:56447038-56447051
Length
675 bp
Sequences
Splice sites
5' ss Seq
ATTGTATCC
5' ss Score
-3.5
3' ss Seq
CCATTGCTTTTCACATGAAGATT
3' ss Score
4.47
Exon sequences
Seq C1 exon
CCCCATCATGGAAGCCTTTGGCAATGCCAAGACCGTGTACAACAATAACTCCAGTCGCTTCGGGAAGTTTGTTCAGCTGAACATCGGCCAGAAGGGAAACATCCAGGGCGGGAGAATTGTAGATT
Seq A exon
GTATCCTGTTTCATTTGGCTTTTGTGTATTAGTATTTGACTCTCTAGTAGAAACTCTTCTTTGCTTTTTCTTAAAACAGACATAGAATATGAAACATTCATTTCTGGTTCTGTCTCATTACTGCTCCTGTTTTACTCTGCTTGACCTGTTAATTATCCTAGGAAATAAGGGGCCCTCTTTCTTTTGGGAATCTCTGATTTCATGTCCCTAATCTGAAAATTTGGACTCCTCATCAAATATCATAGGCTTCCCTGGTGGTTCAGATGGTAAAGAATCTGCCTGCAGTGCAGGAGACTGGGTTGGGAAGATCCCCTGGGGAAGGGAATGGCTTCCCACTCCAGTATTCTTTCCTGGAAAATTCTGTGGACAGAGGAACCTGGGGGGCTATAGTCCATGAGGTCCCAAAGAGTCTGACATGACTGAGCAACTAGTTGTTTGAAATAATCAGTTGTTTCAAATAGCTCGATGCCTTCTAGGGCACACGTATCCCGTTTGAAGTTGGATTTTGATGTAATAGTCTGTTTTGTTTGCTTATCTTTCGGCACTGGAAGTCAGAATGTCCAAGACACAAAGAATTGTAATTATTTGGGTAACAAAGAGTAGAAAACTAAGGACTAATGGAGCATCCTGTATCCTTGTTTTGTTCCTTGACTTGCCATTGCTTTTCACATGAAG
Seq C2 exon
ATTTATTAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126:ENSBTAT00000026812:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(0.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]