RnoINT0096774 @ rn6
Intron Retention
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:77986832-77988484:+
Coord C1 exon
chr2:77986832-77986968
Coord A exon
chr2:77986969-77988399
Coord C2 exon
chr2:77988400-77988484
Length
1431 bp
Sequences
Splice sites
5' ss Seq
TTCGTTTCA
5' ss Score
-27.38
3' ss Seq
AATTTGGTTTCTCCTCACAGAAC
3' ss Score
8.69
Exon sequences
Seq C1 exon
CCCGATCATGGAAGCATTTGGCAATGCGAAGACCGTATACAACAACAACTCCAGCCGCTTTGGGAAGTTTGTTCAACTGAACATCTGTCAGAAAGGAAACATTCAGGGCGGAAGAATTGTAGATTGTATCCTGTTTC
Seq A exon
GTTTCATGGCTGTCTGCATTCGGCCCTGTCTGTGAAAACTTTGCTCTTATTGTAAAGGCCCCAAAAGGATGTGAAATACCTGTTACTTAGTTCAAGCTTTTTTTTTTTTTTTTCTTTAATATTACTGCATTTGGCTTGTTAGTTACTTTATAAACTAAATGATCATTTTTCCTGTGGAAATGTTTCAGATTATGCCCATAGTCTAGATTCATCGCTTATTAGTCTGATTTCTGTTGCTATAATGTAATGTCTGACTGGGTAGTTGATAGAAAAAAAGCCTATCAAATTTTGCCTTTTAAAAAAAAAAAAAATAGCTTGAAGCCAGGTGGTAATGATAAATGGCTTTAATCCCAGCACTTGGGAGACAAAGGCAGGCAGATCTCTGAGTTTGAGGCTAGCCTGGTCTACAGAGTACCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAAAATAGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCCGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCCGATGCCCTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACTTATATATAATAAATGAATAAATCTTTAAAAAAAAAAACAAACAAAAATAACTAAGTAAGTAAATACATAGATAAATAAATAAAATAAAGATTAAAAATTGCTGTGTCTTAGGTCACGGTTTGAGCTAAGATTCTAACAAGTCATGTATTCAGGCTCTGGTACAAGCCATCTAGCTTTGTTGTAGCGTGGTGGTTGGCGTCACAGAGGTAGTGTATGTGAAAGATCACGGGCCAGGAAGGAAGAGGAAGAGAGAACCAAGATGGCCGGACTCCATTCTTAACTATCTAGTCTCAGAAGCTGACAGGCTTATAAGATCAGCATTAGCATAACTGTAGTGACTGTGACCTTCCCTTGGGCCCCACCTCGTATGAGGGCTCTTCCACCCTCAAACCATAGACCAAGGATTCTGCACGTGGCCTTTGGGGCTGCATTCAAGCCATGTCTACCCTGGAGCAGTCACCAAGCACTTGCTGTTTGGTTGGGCCCCATGGCGTTGGGACTGGATTAGGTGAAGTGGGCTTTGTTTGTTTAATGTCTTTTGGCACCAGTAGCAGCAGGGTAGACAGATGAGGGAGGGAGCCATAACTCAAGAGTCCAGGCTAGCACACAGCCCCCTCCCACACCCCCTCTCCACCCGTGTCTGTTTTCTTCCTTGACCGTCCATTACTTCTTGCATGAAGATTTATTAGAAAAAGTAAGTAGCCATGGTTCAGTTCGCAGTTTTCCTATAATGACAGTTTTCAGAGATTGTTTTGTATTAAGTGGTAAAAAAACATTTAAAATATATACATATAAATTTGGTTTCTCCTCACAG
Seq C2 exon
AACCGAGTAGTGAGGCAAAACCCCGGGGAGAGGAATTATCACATATTCTATGCACTGCTGGCAGGGCTGGACCAGGGAGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161:ENSRNOT00000014022:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATCATGGAAGCATTTGG
R:
CTCGTTCTCCCTGGTCCAGC
Band lengths:
222-1653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]