GgaINT0096726 @ galGal3
Intron Retention
Gene
ENSGALG00000012954 | MYO10
Description
NA
Coordinates
chr2:77272055-77273013:+
Coord C1 exon
chr2:77272055-77272179
Coord A exon
chr2:77272180-77272999
Coord C2 exon
chr2:77273000-77273013
Length
820 bp
Sequences
Splice sites
5' ss Seq
ATTGTATCC
5' ss Score
-3.5
3' ss Seq
GTTTTTGTTCTTGGCTATAGATT
3' ss Score
7.92
Exon sequences
Seq C1 exon
CCCTATTATGGAAGCTTTTGGCAATGCGAAGACTGTTTACAACAGCAACTCAAGTCGCTTTGGGAAGTTTATTCAGCTGAACATCTGTCAGAAAGGAAACATTCAGGGAGGAAGAATTATAGATT
Seq A exon
GTATCCTTGTTTGGTGATTTGCCTCCATTTGCAATCTCCTTTATGGAGGGCTGAGAGAGAAGTGACTTACCCTTTTCTGTCTTTTTACCCTATTTTGAAATATACTCAGTTAAATCGACCTGATCTAGGTTGGGAAAAGGAAGTAGGAACACGAAATTCTGCATGTGTTTGTGTCAGTGTGGGATGTGTAAACTCTCGGAGGATCAGGATTTTATGTTGCTGCTATTGTTGTTTGTGCACATACTTCTATGTAGTGAGGTAATGGAGCCTTAGTTCTTGGGATAAGTTGAGTTATCCCAAGCTCTTTCCCTCATTCATTATATCTGAAGATACATTTCTCAGTACTGGAATAGTACTTAAAAGAGCAGAGCTGCTGAATTCGTACATTGTGAGTGTGGGTGGGTCAGATGCTTGGGTTTGCCTTGCAGTTGGCAAAACTGGACTATGAGCCAATTCCAGGAGTGTGAAGATGTTCCTAAGGATGTTCCACCCAGAGAGCAAATTTCATCCTTAAAGCTGCTCCCAAACTATACATAAAAGACTAAATAAAGGAAAGCAGATGCTGTTTAAAATGTAGGACCTTGCAAGTCCAGTTTTTATGCGATGGATGAGAAGGAGGTGTGGAAATATATTGGCATTTTAACTGTTGTAATATTACCATTGTTGCTACTTTGTTCATCTGTTGTAGCAATAGACATGTAATAAGAAGAGATCATGATGATCTTCCTATCATCTCAGATGAAAGAATTAAGTTTATAAATAGCTGCAATAATTTCTTTTTGCTTTATTCCTTGACCAGAGTTTTTGTTCTTGGCTATAG
Seq C2 exon
ATTTATTGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954:ENSGALT00000021128:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(0.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]