MmuINT0103896 @ mm9
Intron Retention
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25653639-25654840:+
Coord C1 exon
chr15:25653639-25653763
Coord A exon
chr15:25653764-25654826
Coord C2 exon
chr15:25654827-25654840
Length
1063 bp
Sequences
Splice sites
5' ss Seq
ATTGTATCC
5' ss Score
-3.5
3' ss Seq
CCATTACTTCTCGAATGAAGATT
3' ss Score
2.57
Exon sequences
Seq C1 exon
CCCAATCATGGAAGCATTTGGCAATGCGAAGACAGTATACAACAACAACTCCAGTCGCTTCGGGAAGTTTGTTCAGCTGAACATCTGCCAGCAGGGAAACATTCAGGGAGGAAGAATTGTAGATT
Seq A exon
GTATCCTGTTTCGTTTCATGGCTGGCTTTGTATTTGGCCCTGACAGTGAGAACTTTGTTCTCTTACTGTAAGGGGCCCAAAAGAACGTGAAATACTTGTTTCTCTAGCTCAAGGGTTCTTTTCTCTTTAATATCATTGCATCTGGCCTGTTAGTTACTTTACAAGGTAAATGATCATTTTTCCTTTGGAAATGTCTCAGATTATGCCCATAGTCTAGATTCATCGCTTATTATCTGATTTCTGTTGCTATAATGTGATGTCTGACGGGATACTTGATAGGAAAAAAAAAGTATTTATCAAGTTTTGCCTTTTAAAAAAAAATAGCCGTAAACCAGAAAGTAGTGATACATACCTTTAGTCCCAGCACTTGGGAGGCAGAGGCAGACAGGTCTCTGTGTTTGAGGCTAGCCTAGTCTACAAAGTGAGTGCAAGAACAACCAGGGCTATACACAGAAATATAAACAAACAAACAAATAAAAAAATAAAGATTAAAGCAGCTTTATCTTAGGTCACCGTTTAGGCTAAGATATTAATAAGTCAAGTATTCTGGCTCTGGTACAAGCCATCTTGCTCCGTTGTAGCATGGTGGTTAGCGTCCTAGATGGCCGGCGGGGGCATGCCTGAGAGGTCACATGCCAAGAAGTTAGAGGAAGAGAGAACCTGACTGGGCGGACTCCACCCTTGACTGTCTCAAGAAACTGACATGCTTGTAAGATCAGCATTAGCATAACTATAGTAACAGTGACCTAGCCACCTTCTCTTGGGCCTCACCTTGTGTGAGGGCTCTTCCACATGGCCCCTTGGGGCTACATTTAAGCCATGTCTGCCCTGGAGCAGCACTAGAACCAAGCACTAGTGTTCAGTTGGGCACCATGACATTGGGCCTGGGTTTAGGTGACGTGGGCTTTGCTTGTTTGGTGTCATTTGGCACCAGTAGCAGCAACGCAGACAGATGAGTGAGCCACAACTCAAGCAACCAGGCCAGCACACTGCTCCCCACCCCCACCTCCATGCCACCAGTATCTGTTTTCTTCCTTGACCTTCCATTACTTCTCGAATGAAG
Seq C2 exon
ATTTATTAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-Myo10:NM_019472:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(0.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: