BtaINT0097738 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018237 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr12:88168943-88174286:+
Coord C1 exon
chr12:88168943-88169018
Coord A exon
chr12:88169019-88174110
Coord C2 exon
chr12:88174111-88174286
Length
5092 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTCATTTATTTATTTCCTAGCTA
3' ss Score
6.3
Exon sequences
Seq C1 exon
GTAATGTATGAAGCTGTTGGAGCAATTGAAAAAAATAAAGACTCCCTTTCACAGAATCTTCTATTTGTAATGAAAA
Seq A exon
GTAAGTTTCCCTGCTCTTTGGTTAAAATGCCACCCATTCTTTATGTCCCTGTCTCTGAACATGGTCCTGTAAAATATGCCACCAGCTAAGGATAATTGAAATATCTTTTGCATTCTAATGCCCAGAATAATAAGGAATGGATCTTGCCATGCTATACTTTGGTTACAATTTAATTTGGAGTCTAGTAGAAACCATAATTTAACTAAGCTCTTAGCAAATAGAAATATAAAACACCTTTCCCACTCTGGCGGTGTGAATATAAAAAAGCTCTTCTGTGTGGACTGATGAAGATGAATATGGTTTCCAGAGTTATTTAGGCCACAGCAGGGTGAATTCCATTACTTAAGATGACTCGGGAGTACACCAAAGGCTGGTATTTTATTCTCATGCACTTTCAGATATAAAGAGCTGATGTTTATAAAGTAAAATGAGAGTACAAGTTTATATATACACACACACGCATATATGTATATACCAATATAGATTTATAGGCAACAGCTACTTAGTGAACCTTAGTACTTTATACATATATTTATATATATATATAACCCTATAGTATATGTAAAATGATGTACTGTATTTATATAGAGTATAGTTATATACATAGATGCCCATATACAGATCTATATATATTACATATAAATTCTATCCCCTCTAGTAATTATTTTATTAATAGCACTTCTGCAGTGATTCACATTTTCCTAATAACCTCTTCAAAGAATTAAAATGTATCATCTTTTGTGCTTTAAGTTGCTCTAAATGAGGTGAAGCCATTTATCATTCCTGGGAAAAGAAGCATATGATAGCCTTTCATGAAATAGCTGGATGCCTTTGAGCTGGAAACAAGACATCCATATCACTTCTGGCTTGAGGAACATCGTTACCTTAAATCAAATAGCAGAGTTGCAATATATTGCTTTTCATGGAGAATGACTCCACTTGCCTCTCAGGATGTATGGTTATTGAGTTCTCTTAAAGGTTGAGGCTAATGATAAAAGCATGGACTTGGAATAATACCGTGTAGAAAGAAAAGAGTGAGATAATTGAGCTTATGATCACTGGAAATACCTTCCTTCTGGTTTTCAAATATTTGGACTTTCATTTATAACATACTTCAGTTTAATCCATATACTTTATGAAGGTCTAGTGTACAGCATGTTTTCAAAGTTGGCACAAGAATATGTATTTAGAATGAAAACAAGATAGCTTGTGTTATTGCAATTCTGCTTATCTTAATAGAGGCCTTATATTTTAAAGTTACTCTTTTGTGTATGCTGCCTGACAAGTGCCAAGAGAAAACAGGTGAACCTTATTTTAAATATTTTAGACTATAGATACATCTGAACATGAGCATAAAGTTTACAATGTGTCCTTATATGTTCATACAAGAGGCGGCAAGCACTTTCTGCAAAGGGTTAGAGAATAAATATTTTATGCTTTGCGAGCCATAAGTTCACTGTTACAGTGACTCAACTCTGCTATGATAAGGAGCAAGTGGCTATAGACAATACATATGGATGTGGCTGTGTTCCAATAAAACTTTATTTACAAAAACAGGCAAGGGGCTGGATTTGGCACCCAAGCCACAGTGGCTCACCCATTCTGTCATACAAGCAAAGAGGATTGAGATAGTAGTTTATGAATCTGTGGAATGTTGTAACACTGCAAACAGTTATTAAAAGAAAGTGTAGTTTACAGATAACAGTAATGTTTCCAGACACCTTGCTAAGAACTTTGCTTACAGCACCTGATTTGTATCCTATTATCTAAAAGCTCTGCCTGAGGAAGGAGGTGGGGTCTGTGGCAGGATCTTCGCCAACCTGGCTGGGGCTTTGAGACCCCTGCCCAGTGCAGACCGGGAGCTGGGTGACAACTGCTTAAACAGAAAATCAGCATGGGTCCCTCTGGGCACCTGAGCTGAGAAGTCAGGTCCACTTGACTCCAAAAGATGCAGAGAAGTTAAAATCCAGACTCTTCAGTCTGCTCAGAAGTAGAGGAAAGCTATTTACTGCCGATGCTGCTGCTGGCGGTTCTGCATTCCTGCTTACAGACCTTGGGCACCTCCGTCAGCTCATCCCCTTTTCCTGGCAGGAAGGTGCCCAGAGCGTTGTGTGGAGACCCCAGCAAGGGGTGCTTCTCATTGCCGCTTGTGCATATGGGGACCTGCAGGAAAATGCCTGCAGCAGGTGACTCCTAGAAATAGAGTAGGGAGGCCAGAGCTGGCTCTTCTCCAAGGGCTTCCTCCCCAGGTTCTTAGGCGCGACATCAAGGCCGGAAGTCTCAGCGCACGCACTCTGCCTGTGGGCGGGGCTTCACTGTCACAGGATGATGTGTCTCCATCACAGGGCACGGCTTCTCCACTTGACCTTCACGCGGCCCCAGCCTGCGATCCAGAGAAGGGACAGACACCGTCAGTTATGTGTTTCCGTTCATACTTCTAGAGTTGAGAGGTTTAGTAAAGACATTTCCCAATTATGGGAATGACTTGCTGCACTGTTTTATGCGTGGTTCCGTTCATCCACAGACCAGTTATAAATAATATTTTTAGTTAAACAGGTCATGGCATTATATGTTTACTGTTTCACTGTTGTTTTGAAACAATTTCAGACTTAAAGAAAAGTCGCAAAATTAGTACAAAGAACTCCCATATGCTCTTTCCCAGACTGACTTTTTTAGTCTTCTTCCTCTTTTTCTCTCTTGCTGTCTACTTCCCATCTGTGTGTGTGTGTGCACACATGCTCTGAACCACAGGAGAATGGCCAAATGTCTTTCTGCCCAAATCCTTTGGTCCCTATCCAGAGACCAAGGACATGACCTCCATAACCCCAGGAAATGACCAGACTATTAAATATCGATATGGCTGCTGATGCTGCTGCTGCTGCTAAGTCGCTTCAGTCATGTCCGACTCTGTGTGACCCCATAGACAGCAGCCCACCAGGCTCCCCCGTCCCTGGGGTTCTCCAGGCAAGAACACTGGATCAGACTATTATATATTGATATGGCACAAGTATCTAATTCAGAGTTCAAATAACACTTTACTGATTATCCCACAAATCTCTTTCAGAATGATTTTCCCCCCAATTCAGGATCATTTGTGAGTTTAGTTGCCATTTCTCAGTAGTCTTCTTTAATCTGGGACCCTTCCTCAGCTTTTCTTCTTGACATTAATATTTTAAAAAGTGGAAGACCAGTTTTTGAAGAATGTCCCTCAATATGGGCTTGTTTGCTATCTCCTCACGTTGGAATCAGTCTCCACCTTCTTGGCAGGAGCCCCACGGAGGTGACGATGTCTCCTTCTTAGCACATTGTGTTCCAAAGCTCATGGTGACCTTCACCTTGATCACTCTGTCCTTCAGAGCTCCCTAACGTCACTGTTTTCGGTTTGTAACTGATACGTCATTTCTAAAGCAGTGTTTGTCACAAGCTTTCACCCGTTAGTTCTGACTGAGGCAATGATTGTTGCCTACATCAGTGATTTCCCTTTTGGTTACAAAAGTGTGATTTTTATAACCCCCGTCTTCAGCAATGACATCCTGCTATAAGAGCTCTCCTTTCTAATAATTCATCCATCCATTTGTTCATTCATTATCAGTACGGACTCACGAATTGTTATTTTATTTAAGGGACACAATCCATTACTGTCGTTATTTTGATACTAAAATTTCCCAAGACTTAGCCAATGAGAACCCCTCCAAGCTGGTTCTTGTGTTCTTTTGACAGGTTCTCTTGTCCTTTTTAAGCACTGTTTTACATTCTGGCTTTCCAAAATATTCTAAGATCCTCTACCTTGCCTCACATCCTAAACTAGCCACTTACCCAAGATGCCTTATTTTATAAACGAATAGTATTAAGAAACTTAGAAATGGGGGCAGGCTGGGCTCATTGCAACTGGAGTCTTACTGCTTTTAGACCCTTTCAGAACTAGAAAATTTTAAATATACTTATAGATTTTATACACGCACACATATATAAAACTGTATATTAAAAGTCATGAGTTTATTGTGATTCCCAAAACTCAAACCTATAACCACAAGGCTCCTGTTTACCTTCCTGTAATCCATAATTGTGTCTTCGCTTCTCTGTCCCTTCTCCTGGCTCGCTGGTTTGTTTGTTTCTTTTTTTTTTTAATTCTTGCAGTGACTTTTCACTGAATGCACTGCTAGTAAATATATCAGCTGGGCAAGTGAAATCATCTGAGTGTGGAAATGGTAGAAACTAAACCACTTGCTTCTGCCATTGCTGACTGTCCAGTGGGCTAAGACTGATCCCAAATCACCCTTCAGTCTTATAGGAACCCACAAAGTAGGTACTCAGTGGTTATTTTTTAGAAAAGGAAATTAAGGCTTAAACACTGCCTGTATACAGCTGTAAGTAACACGAGAAGCTTGCCTTCTAGGTGCTTAACTGACAGACAAGGTTCTCACTTGACTGTTCAGATTTGCCACCAAAACTCCATTCATTCATGCACTCTTTTCTCCCTGAGGTGTCAGGAAACACGTATGGACCCAGGATTACTAGAATTTTTGTAAGCTGACATCTAAAAGTTATCAGCTTGCTTTCACGTTTGCAGCCTAACTGGATCAGAAAAAGAGGCACCTCTTCCCCCAACAGCAGAGACAGCTGAGTGAGTCAGGGGCTCCCCCGATGTCTGCAGACGCCCTGAGAGCTTCCTCCTGGGGCTGTGGGCTCCTGGCAGTTGTTTTCCTGGAACGGAGAGCTGATAATGGAAACCATAAGTCTTCATGGCTTGGTCAAGTGCCCTGAGGTCTTAGGTCTGAGCAGGTCCGATCTGGTTCTGGATGTTAGGAGAGCAGCAAGTGCCCCTGAATTTGAGAGCAAAGGTTTCAGGGCGCAGGACGAGGGCAGGAGAGCTTGGGATCCAGACTCCGGGTGGAGGGCAAAGAAAGTCAGAATTCATCAAACGGTGTGATGAGTAGTGGGGAAAATGAAAGCAAAAAGGACAAGGAAATGTCGATTCCCTCCCCGCACAGAATGCTTTCATGGTGAGAGCGCTAGGATGAGGGGTTAGCTTAATGCTTGCGTAAATTACGATTCTAATGCCACTTACAGTATTCATTTATTTATTTCCTAG
Seq C2 exon
CTAGTGAAAACGTCGTGATCAATCATTTGTTCCAGTCGAAACTGTCACAAACAGGAGCCCTCGTATCGTCCTCTCCTTCTTTTAAATTCAGAGGACATAAATCTGCCCGGCTCAGTAAGAGAATGACAGCGTCTTCAATGATGGGAGAAAACAGGAATTATCTAGAACTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018237:ENSBTAT00000024275:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development