RnoINT0096854 @ rn6
Intron Retention
Gene
ENSRNOG00000016483 | Myo16
Description
myosin XVI [Source:RGD Symbol;Acc:621561]
Coordinates
chr16:84717443-84720710:-
Coord C1 exon
chr16:84720635-84720710
Coord A exon
chr16:84717616-84720634
Coord C2 exon
chr16:84717443-84717615
Length
3019 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTCATCTATTTCTCTCCTAGCAA
3' ss Score
7.4
Exon sequences
Seq C1 exon
GTAACGTATGAAATCAGAGGAGCGGTGGAAAGGAATAAAGACTCTCTTTCACAGAACCTCCTATTTGTAATGAAAA
Seq A exon
GTAAGTTGATTTTTCTCCCCACACTGATTTCTCAATCTCGGGACAATATCCTGTGAAAAGCACTCTACCCGCCTAATGGGCAGTTGGACGACCATTTCCTCCCCAGCTCTCGGGATAGGGAGGGGTGTGTGTTCACACTGAGCTTTGCCTGCGGACTAATTGGGAGTCCACTGGAAATGCAGTTTTGACTAAGCTTCCAGCAGACAGGCATGTAAAACCCCTTTACTACATCCTTGTGTGAATCAGGAAGAGCTTGTCCCTGGAGACTAATGACGACCAAATCACCTTAGGAATGTTTGTAGGCCACAGCACAGAGAGTTCCATCACTAGAGACAACTCCAGGGCTAAACGAGAGTGGTATTTTATTTTTATGTACTTCAGTTATGAACTACTAATGCCCACTAAGTAGAAAGCTGATCAATGTATATATGTATAAACACATGCATATACATATGTATATAATTTTATATATAGTTATAGGCTCCTACTTAGTGGATATTAATATTTTATAAACATATATCAATTATAATTCTATTCAATATGTAACACTATATTCTAACATATTTACCATAATCGGATATGTGTGATTCTGTCTGTTCTTAGTAATCATTTTCTTAATAGAGGCCCTGGTGATTCACGTTTCTCTGGTAGCCTCTGAAGGGAAAGGTTGAGCCTCCTCTGAGGCAAAGCCATTTGTCTTTCCTGGAAAGGCAATCCAGGCTTTGTGAAGTGGTCAGAGGCTTTGAAGCGGAGGTCAGATATCTGCGTCACCACTGACTGAAGGGCGTCACTGTGCACATCACAGCCTCGTGGTCTTGATGCATTGTTTACACAGTGTCCTTCTCTGCCAGCCTCTCAGTCACGCAGCTTTTGTGAGTTCTCTTGGCTGAGACGCTGCAGGGGAACAGGAGCAGGGGTGAGAGCACAGAGAGCTGGAGACTGGAAAGGCTCAGCCTTGCCCACCCTGTAGGGTACCGGCCTCCCCACTCAGGTCTCTTGAACTTCCACTCTTAGGCTGGTCTCTGTGTGAAGGTCTGACAAGCAGAGTGCATCATAGATATTAACCCTTTGTGTTATTTTTATATGTGCATAGAATGAGAAAATGGCATCTGGGGGATGTTTTAATCTTGCTTGTCTTATAGAATGCCTGTATCGTAAAGCCTTTCTTCTGTTTTCGCTTGCTAACAAGTTAATTTGATTTGAAGAAAGCATGGTTAACTATTGCTTAGTCCTCAACAGGAGGACTGAATTTATAATATCATCACTTAGGTGAGGCAGTAGATACTTTCTGTGGAGGACACAGAAGTGTCTGGCTTTGGGTCTCCTTACAGTTAGCTCAGTCAGGATAACAGGACAGACGCTATAGGCCGTGCAAAGGCACAGCAGTGCTCCATTAGCACTAAGCGTAGCCATCACAGGCACGTGTGTCTACACATGGCCTACAGACTGTAATAACTCACATACTTCCTCATACTGCTGTGACAGTATCGTGTGACTCATCAGAAGGTGATGGCGCCGTGGAGAGTAATTATGAGGACATAGAGCTAATAAACAATGGCTTCCAGTGGAGTCTTCGTCACAGTAGGGGGCCCAGTTGAGGAAGGTAGAGTTTTAATCTTGAGGAAAATAGGGGTCTACCTTTAAGTAAGGCAAGTGGGGTTCTACCCATCTAGGCCTGAGAGCAGAAGTAGATAAAACTGCTTCTTCTCAGAAATTCACTCACCCAGGTCTAAGAGGCACAAGGTGGGCAGGATGCCCATGAAGTATGCTTTCTGCTGGAGCTCTTGTGGCCATGGCCAGGGCACTGACAGGACATCCCAAGAGATCCCCAGCTGTGTCAGGAAGCTACTGGTCCCTGCTTTATCGTTATGCAGTCTGGTCATGAAACTGAGAGAAAAGTCAGAAATGGGGCAGCAAATGTTGTGACCCACATTTATGTCTAGCATTTTAAGTATGTTAAAGACATTTCACCTTTATAAGAAGTTATCATTTATATGTGAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACATACACACACAAACACACAGACATACACACACACACACACACACACACACACTCGCGCGCGCGCGCCACATATGTAATATGTATGGTTTGCTGTTTTGTGTGTGTGGAAAAGGTAGAAACTAACCCACTTTGCTGGTGAACATTGTGAAATGAATGTCCGATGGACTGAACAGGATCCTAAGTAGTTATGCAAATTATCACAAGTTTTAATTTTGTAGTAATGTTCAAGATCTGGGTACTGTCGTTTTCGTGGTGTTTTTAAAAGCCACTTGAGCTTGGAAAGTATCTCCATATAATGGACGGCTCCTCTCGGGTTCTTAGCCAACACACGCACATTACTGTTTCTCTGTTATTCAAAAGATTCACAAACCAAAGCCCACCTGGCAGAGCTCCAGCCCTACCTTTAGAAGCTAGGCAAGGTCTCATAAGTCTAGACTTTTACATAGCAGTAGCCTGGTGTCTGAATGGTACCAGAACCCCTCACTTTTGCAGCTGAACTGAGTTGGGGGGTGGGGGGGACTCTTTTGCTACTTTACCTAATGACGGATGCAACCAAATGAAGCAGAGCCACCGGGAGCATTTAAATACTTCTCCGAACAAGGTTAGCACTGGCGTGATGTCTTCCGGATGGGGTAGTTATTTTCTAGTAATGGGGAACCGCAGCCAAAACCCATGTTTTTATGACTGTATCAAGTACGCAGAAGCTAGCCAGGTCTGACCTGGTAAGATTCAGTGCTGACAGCCAGGACAGGAGGAAGTAGACTCTTTAGAGAGCCGAGAACCAGGAGCCATGAGTTGAGGTTGAGAACCAAGACTCAAGCCAGAGTCATTGTCTGTTTGGAAAAAAATGAATGCTGGTGGAAATAACATAGATGGGGGGAGGGGCGCTTTCATGGAGAGTGAACTCAGCCTCCTCAGTGATTTTAAGGCTGTTTACAATATTCATCTATTTCTCTCCTAG
Seq C2 exon
CAAGTGAAAATGTCGTGATCAGTCACCTGTTCCAGTCAAAACTCTCACCGACGGGATCGCTCATATCTTCCTACCCATCCTTTAAATTTGGAGGACACAAATCCAGCCTGCTCAGTAAGAGAATTGCCTCTTCAATGGTTGGAGTGAACAAGAATTACCTAGAACTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016483:ENSRNOT00000022742:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]