GgaINT0106600 @ galGal3
Intron Retention
Gene
ENSGALG00000016837 | MYO16
Description
NA
Coordinates
chr1:142558377-142560845:+
Coord C1 exon
chr1:142558377-142558452
Coord A exon
chr1:142558453-142560669
Coord C2 exon
chr1:142560670-142560845
Length
2217 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATTTCTTCTTCTTTTCCTAGCCA
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTTACTTACGAAATTGCTGGTGCAGTAGAAAAAAATAAAGATTCCCTTTCACAAAATCTCATATTTGTAATGAAAA
Seq A exon
GTAAGTAAATGGTTTTGTGGTTGCTGTTCTTGTTAGAAATCAAGATGTTACACCTGGACTTTGATTTTCATTCTTTAAGATAGTGCATACATATTTTTATTTCCTGCAAAAAAAAAAGTCATCCTTATCTTCACTGCTTGAGTATGGTTTTTAAAAGTAGCAGCATCTGGGCTTTCTTGTTTTCCAGTGAACAGATACAAATGTTCATTGAAATACAAAGTGAAATACCTTTCCATGTGCATATTGTATAATTATGCCTAATAATAATGCATCTCCATTTATTAATTAATGATTCATAATTGGATAATTAAAAACCTAATTCATTTACTCTTTCTGTGAAGAAAAACAAAACATTTTCCTCAGGGAAATGTCAGTACACCCTGAGATGTTATTTGTCTTTGTTTCAACTAGTGCAGTCTTCCCTTAATATCTTACATGTTTGTATTTCTTTCAATAGAAATGGAGATCTTTTGGAAACAATATTTGTCTTCCAAATCAGCTGTACTGTTGCAGTATGTTGTTTTTTCACAATTTTACTGTGAAACCAATCTCTGTGGTAAAATAATTGATGCTTTTTAAAGGCAAGATAGTATACGTGAAAGATTTGAAAAGAAATGAAAGAATTAATCTTGAATATAATCCTATTGATTATAGTTTAAAATAGGTTCCTGTTCTCACTATTGGAATTTGTATGATTATCTACCAAATAGCACAATAAGTTTTATCATCAATTTCCAGTGTGTTCTACAAGAGAGCATTCTTCCATTCTCTTGAACAGTTTGTTTTTGCATCATCGTTGCTATTTTGTGTAATAATCTATGCAGCTTTTAAAAGAGAGGAATGGAGAATTGGATTGCATATAAAATATTTGATTTGCAGCGAGTAAGTATATATAATTAACAAGTCAAATAATAATAAATATAATTAATGGGAAAACTCTGAAGGAAGAATATTTTAAAGGATCTAAGTGACTTAAGGGCTACATTCCTTCTTTTCAAAGTGACTTAGGCTTTTGGAACTTAAAACTATTGATTGTCGATTATGTTTTTCCTTTTGTGTCAATTTCATAAGCTATATAGCTTAAGTGCTTTCTTCTTTTGTTTTTCATTGAATTTAGTTTCCTTACTCAGCTAAAAACCTTTAAATACACTAACAACATCGAAGTCATTTTCATGTGTATGTTCGAAGGTGGAACATACACATCCTGTAGATGAACCAGGAGATACTATTAATGTAGGTTATATCTGTTTTGATTCGAAGGGCATAATTTTAACATCTTTCCTAATGCTACCTATTACATTTGTCCATATTTAAAAAATGGACTATTAAGTCCACTGATTGTGCTGAAATTTATTCAAGTGTCTGCTTTAGTATCTTTCTCATAACTTATACACTAATATTATTAGTGTTAAGTCAGCAATAATAATCTCCACCAAAAAGAAGAAACTAATCTATTACATTTAAACATCTAGTAAATATATCTTTACACAGCTATTAAATAGCAAACTGAAGATTTCTATGTGTTATGCTAAACTTAATGGCATTTATAATGAACTTTATTCCATTTATCCATTAACTGGAATTATTATGAAGTACACTGTCTGTCTTAAGATTCACGGTTTTAGTTTAAAAACATGTCTTGAAAGTAATTTGTTCTGTGCTAATTATCACACTACATCAAAAATATATATGGCATTATTATTTTTTTAATAAGTTAAGTGTGATTTTGATGCGAAGAAACATGAACTTAGCTTCTTGCTATAGTTCTGTCCTTTACCAGCACCTTGGCTGCTGCCAAATGCCTTGATCATTTCTAAATGCTACTTGTTAGATACATACTACATCATGTATCTCTTACATTGCTTTAATAGATAGATATATTAGTAGTCAGTAATGGAACAAAAGTCAAATGTGATTATAACATAAGTAACTAAGTTTGGACAGATCATAGTCTAAGAGCTATGTTGTCTGTCCTGTTTTATTCAGAATAGGACCTAAATAGGTTTAAAAAGAATGTTACTGATGACTGACATTCTTATATATTGAGTGCTTTCTGGTAACTATCAGTGCATAAAATAATAGTTTTTGAGATGTCCATTTGTTTTACATTTACTTTTTTAACTGTCTGTTACCAGATGCATATTTTTCCTTCCTTTATGTACATGCTTTTTAAACTGTATTTTATTTTCATGCATTAATTTCTTCTTCTTTTCCTAG
Seq C2 exon
CCAGCGAAAATGTAGTCATCAATCAATTGTTCCAGTCCAAACTGACACAGACTGGATCACTCGTTCCTCCATATCATTCCCTTAAGTTCAAAGGATGTAAAGCAGCAATGCTGAATAAAAAAACATCAGTAGCCTGTGCAAGTGGAGAAACAAAGAAATACGTGGAGCTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837:ENSGALT00000036558:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]