BtaINT0097768 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018237 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr12:88020046-88022933:+
Coord C1 exon
chr12:88020046-88020121
Coord A exon
chr12:88020122-88022779
Coord C2 exon
chr12:88022780-88022933
Length
2658 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CGCCTCCTGGTTTCTTGCAGACG
3' ss Score
9.86
Exon sequences
Seq C1 exon
GCGAACCTGGTGAAGCTTCTTCTGATGCATCAGGCAAATCCGCACCTTCTGAACTGCCATGAGGAGAAGGCTTCTG
Seq A exon
GTAAGCCATGAACATCATACCAGGCCCTTTTCTGTCTTCCTGGAGTGGCTGGCCCATCACTGCCCCAGCTACCTCGTGAGTCAGTGTCTCCGGGGACGCTCAGTGAAACGCTCCCCCCACCACGCCAGCCAAGCCTGTGTCGCTGACTCCTACACACTGCTCTGTTACGGGAGTCTGTTAGAGAATAGTTACCGTTCATAGGGATCATTGCATTGTACTGCACTGCAATGTGCTTTTGAGGCTTTAAATTTTCTGGGCAGTGATTCTTGCACTGTCGCTCACTTCAAAATAGATTTTCTAAAATACATGCTTGTTCTTTAGGGTATTCTAAAATGGTAATAGTATTTTTTTCTTTCTGCACAAATATTTATATTGCAGACAATAGAGACTAGTATTACCAACCTAATTTAAAACTTTGACAATCTTAATGTTGCTTATTTTCTAATAAATACCTTTTAAAGTTTTCTAGAGTTCTTTCTGCCACTCTTAAAAACTGAGTGCTACATTAATTTTCTAATTTTTAAAAGTTGACAACAATGTTACTACCTGTAAGGTGTTTTGGTATATTAAAAAATAAAAGTTCTAAGTAACAAAGAGAAAAATCTAGTGAAAGTAACAAAATGATATAAAAATTTTGAAGGTAATAATTGATATGAATAACATAAATATGCTTATTCTTCTCATTTTTATTCCTCCAGTGACCTAAAAGCTTGTCATGCCTGAACTTTCTTATTTCATTTCAATCGCCTTGGGTGTCTCAAGGCAAAGTATGATTACCTGATAAACCGCCAAGTTAAGACAGAATGCTCTATTTCTTATTTTATTGGAATTAAGTAACATTGTCTAATGTTTATTCATCTTATTTGCTGAAAATAGACTGAAGACTTAACTAACCCCTGTCAGACAGCTTAATAGTTTCAAACTTCAGAATCACGTTAATATTAATGATAGGGCAGTAGTCTTACCATTACCTACAAAAATATGTGCTTAATGGTAAATATGAAAAGAGTAAATAGAAATTTGTAGCTTTTTCCATTCCTTTTCCAAACATTTTTATTGGAAATTCAAGTCACGTCCTCTGTTAACTCTAGTTCTAAGAGAAGGTGACGTTTTTCCAGGATCGTAATTCTGGCATTTCTCCCGGAGAATAGTGTATATGATTGACCTCCGACTGCAGGGACCCCTGTCTGTCACACTTTGACCTCTCAGGTCTAGTATGAACTTGCCAAAAAAGAGAGACCCAAGGCGATTGACAGGGACAGTCCCAGAGCCCCAGGAGTGACTAACCTGCTGGTCTAGGCTCGCCCCGGCCGCCGCGGACCTTGTGTCTGATGAGCCTCAGACAGTTTTGCCTGCTTTGCCCATGCAGCGTCTAGCATCCGCGTAATCCGTTTTCCATGCCGTGTTGATCACAGGGGACATCGTGATGGGTGCGAAGTAGATTCTTAGTAAACACTTGCTGATTGAATGAAAATACTTCTCACACACACAAGGGACAGAGGACTTCGAGGCAGTGAGAAGCTTCAAGCAGACACAGGGCACACGGCATCTCATGCAACTGTAAGAGCGAGGAGTTAGATGATAGTGCAAAGGACAGTGAGCTACACACCCATTTCAGCTGAGCACAGAAAAATCATTCATCACTGCTGCATTCTATTCTTGCTATTTTGTGTTCTTTGAATTTGGAATGAACACATGAAGGATTATCTAGGGGATACAAGCAGTTGGACGTAGCGCTGTTTCTTGGTACAGAAATAATCTCCCGAGATGAGGGCCCTGAGCTGTCTCCTGCTCATTACACGGAATGATTTAATCTAAAGCAAATGATGATCAAATCCTGGCTTAAATATCTTCTTGCAGTAGCTGAGTTACTTCACCCAGCCTGTAAAGCATGTAACTCAAGTCCATGGACACGGGAGGTTACACAGTTTAGTGGTGAGGGCCAAAAGGAGCAGCTGTGGCCATCAGGTTTCTAATTGTTAATGCCACTTTTTCTTCAGGATGTGCCGATTTTCAGTTTCAGTTGCTAACAAGCATAAATCTGATTAATGCACATCTATAGTGCTGCCGGAGACTGTTCGGATGTCATTGTTAACGTGTGATTTGTAGGGAAATATGATTATTTTTATTTCTTATTGAAAGTGAAAACTAGGCTATGGAGAGAGGCCAGACCCGCTGTTTTTTAAAGGCACAACCGAGTATTTACTTGTTCATCTGCCCACTTAGCAGAATGCCTGTAGAACGCCTGCTGCCCGTTTTATAAGTGCCCAGTTGTTGGGAGGGTACAGCTCTTTTCCTCTCTTGACTCATATTCACCAGGATGAAGGGAGATTCTCATGGAGGAAAACCGGCTTTAAGTTCTGTCAAGCCCGGCTTCTCAGTGATTTCGCATTTTACCCGTGACCACTCCATGAGTATTATTTTTGTATTTGTTCTTTTCATTTGTAATTAAATATGCCACTCACTGATGTACCAGGGAATGGTCTTTTGCAATGGTGATGCTGCCATTGTATTCCCACCGTGGACTTTCCCTGTTTTTCGTTTTGCTTCGTGTGTTGATAAGTCGTAGCATGGTAAGCGCAGCAGGGTCATTGAAAGGGAGCGGTTTCCTGTGACGTCAGCACTCACCGGCTCCGATCGCCTCCTGGTTTCTTGCAG
Seq C2 exon
ACGTCGCTGCGTCGGAGTTGATTGAGGAAATGCTGCTGAAGGCCGAGTCTGCCTGGGAAGGAAAACCGCAGGCGTCTCTCTGTGTTCAGACCTTGGCCCAAGAGGACCCTTATGAAGAGATCGTCCCTGACCTTCCGGTCCTTCCCAGCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018237:ENSBTAT00000024275:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(19.8=65.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development