HsaINT0108352 @ hg19
Intron Retention
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:29822]
Coordinates
chr13:109472685-109475626:+
Coord C1 exon
chr13:109472685-109472760
Coord A exon
chr13:109472761-109475472
Coord C2 exon
chr13:109475473-109475626
Length
2712 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTCTTATTTTTTTCTTGTAGATA
3' ss Score
10.65
Exon sequences
Seq C1 exon
ACAAATCTGGTGAAACTTCTCCTGATGCATCAGGCAAACCCACACCTCGTGAACTGTAATGAGGAGAAGGCGTCAG
Seq A exon
GTAGGTTAGGAGCATCCTTGGACCATTGAGCAGGTACTGTTTTCTTCCTTTCATATTGGAGTAGCCATCCATCTTCAGCACAGCTACAAAGTGAGAGCTGGACATGCCTGTGAAGCTGTGTAACAACCAGCCCAGTTCAAGCACAATTCATCATCGCCTATGTACGATGATATAGGCGATGTGAATAGCCTCCATTGCAAGAGGCTATTCACAGTTTAATCTACACTGTACTGTTGTACTTTGTTGTATTTTGCCTTTCATGTTTTAAACTTTCAGGATAGTGATTCATTCAGTGTAACGTACTTTAAAATACATTTTTACTGTTATTTAACTAATATCTCATCCTACCAAATACATGCTTATCCGTTAAGGTATTTTTGAAAAATAATAGCGTTATTATCTGTGCAGATATTTAAACTACAAGAAAAATACAGAGGCTGACATTCTTATGCAAATTTAAAACTTTGAAAATCTTGACTTAATGTTACTTATTTTTTAATAAATATATTTTTGAAGATTTCTAAAATTATTTTAGTCACTGACCTTTTGTATATTCATATACTTATTTAATAAATGGATGCTACATTAATTTTGTGGCTTTCAAAATTTAACAGAAAGTTACTATTCATAATTATTTTTGCAATAGTAAAAAGAGTTCTGAATAACAAAGAGAAAAATCTAGCATAGGTAATACCATAACATCAAAATATTGAAGACAGTAATTGATCTGAATAACTTTATAAATACATTATTCCTCTTGCTATACCTCTGCTGACTTAAATGTACTTTACTTTTGAGATTTGTCATTTGATATACTTTCAGGAGTATGAATTTCTAATAAATCTCCAGTTAAAGCCAGAAGAAGGGATTTTTCTCTATTTGTTATTTATTGGAATTAAGTATCATTGTCTAATGTTTATTACTTCATCTTCTCTGTTAAACTGAATATTTACCAAACAGAAATTTTACACAGCTTAATAGTCACAAACTTGAGAATCAAGCTAATATTACTTATAGTCTAGTAATCTTAACATTAACTATATTAGTATGCTAATGATAAATATCAAAAGAACAAATAGACATTTTTAGATATTTTCTTTTTAAAAACGTGTTTACTGTGAGTACAAGTCACATCCTCGGCTAACTCTAGTCTGGTTCTAACAGTAGCTCACACTTTTCAAGTTCGTATTCCTGGCTTATTTCCCAGACAAGGGAGGATATGACTGACCTTTGACTACATGGACTCCCATGGCATACTCTCACCATTTAGGTCTAGTGTCATTTCAAACAGATGTCCAGGCATGGCAGTTGACAATCTTAGGAACGGAGGCAATGAATGCACTTCTGGTCTAGACTCAGCACTGGTCATCTCAGCACAGTGCATGAGGACTCTCTCAGGCAACTTTTACCACATTGGTCATGCAAAGTCGACCAGCAACCTAGTACCTTATTCATGGCCTGTTGGCAATATGAGACACAGTGCTGGGCCCATAATAGATCCTCAGTAAAGATTTGCTACTTGAATAAAAATACTTTTATCACATGCAAAACGCAAAGAGTTATAATGCAGTGAAAGGTTTCAACTAAAGCAGATATGCCAATAATCTAGGCAGCAAGAAGATAAAACTAGATAAAACCAGATGCAAGAATAGAGCAGAGAACAGTAAACCAGAAACCCATGCTATAACTGAGCAAATGAAAGTCGTCATCAGTACTATAGTATATTGCTGTTATTTTATGTTTCTTGAATTTGGAATAGATTTATGAAAAAAATCTGTGGGAAAAACAATTTGTTAAGTGGGACATAAATTTAATCTCCCAAAGTAAGAAAGCTGAGCACTCACCTACTTTTTACATGTATATAATTTAATCTGAGGCAAATAATGATAAAATCTTTACATAAATATCTTCTTGTGGCAGCTACATTACTGTGACCATCCCAGAAGGCCACATAACTCTAATTGATAGACATAGGTGGTCACACAGTCTGGTCCTGACGATTGAGAAGAAGCAGCTGCCTCCAGTAGGTTCTTAATTGATATGAATGTTGATTTTTTCCTCATGATCTGTATCAATTTCTATATCAGTAATTGTTGTTAGTATAAACTTGATTGATACATAACTATGTTGCTGCCCAAACGTGTTCAGATGTTACTGTTATGTGTAATTTGTAAGGAAATATATTTATTTATATTTGCAATTGATAAAGGTAAAAATATTATGGCTAGAGGGCAGACCCCTTGTTTAAATAATACAACTGAGTATTTACTTGTACAACTACCCATTTAGTAGAATGTTTATAGGAGGCCAGTTACATGCTTTATAACCCAGTTGATGGGAAAGTGTAACTCTTTCTGTAATTTTGGTTCATAGTCGCCAAGATGCAGGACAAGTTTTACTGAAAATGAAATGACATTAAGTTTGCTCAAGCTTAGATTCTCAATGATTTTTTATTTTACATATCACCATCCAGTCTATACTATTTTCTATTTCATTTATAATTAAATGTGTCACTGATGTAAAACAAAATAGTCTTTTAAAATGACAGTACTTCAATTTTATCCCAGCCGTAAACTTTTAAGGTTTTTTGTTTTGATTCATACATTGATAAATTTTTAGCATTTTAAGCATATCGGAATTATTGAAAGTAAATAGATTTATGTGCTATCACCACCCATCATTTTTCTGATTTTTCTTATTTTTTTCTTGTAG
Seq C2 exon
ATATTGCTGCCTCTGAGTTTATTGAGGAAATGCTGCTGAAAGCCGAAATTGCCTGGGAAGAAAAAATGAAAGAGCCTTTATCTGCTTCTACCTTAGCTCAAGAAGAGCCCTATGAAGAGATCATTCACGATCTTCCCGTACTGTCGAGTAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515-MYO16:NM_015011:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(19.5=65.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)