RnoINT0096869 @ rn6
Intron Retention
Gene
ENSRNOG00000016483 | Myo16
Description
myosin XVI [Source:RGD Symbol;Acc:621561]
Coordinates
chr16:84850534-84853113:-
Coord C1 exon
chr16:84853038-84853113
Coord A exon
chr16:84850688-84853037
Coord C2 exon
chr16:84850534-84850687
Length
2350 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCCCTCACTGTGTCTCGTAGACA
3' ss Score
7.31
Exon sequences
Seq C1 exon
ACAACCCTGGTGAAGCTCCTTCTGGCACATCAGGCAAACCCCCACCTTGTGAACTGCAATGGGGAGAAACCATCAG
Seq A exon
GTAAGTTGGAGCAGGCTGGGAGCCTCTTCTTTTGGCACAGACACTACTCATCCATCACTGGTGCAGCCTGAAGTATGAGTGGAGGACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACGAGCTCCATAAGGGTTCTCTTCGCTGCTCTGTGAGATTCTTAGGGCATTGAGTAAACCTGGTCCACCACCACCTTTCTTTCACATAGTTTTTACCCACTGAGCCCTAGACAGGCAACACGGCAGAAACTCTTTCACTCTCATCTCCTTTGTTACTTTGTTGCCAGCTACTCACCTATCCTGATACTTATTTTAATTGTGTTTTCCTTGAGACTATTTAGGCTTAAGCACAAACTAATAGTTAAGTGCTAACTCAGATCTCCAAACTCTTTATTTCAGAAGGGTAAATGCTTCTGAAGACTTCCGTAATCTTCTTTGCCACTAATAGGATCCTGCATCTAATGCTCTTAGTTCTGAAGCTTTTAAAATTTAATGCCTGCTACTTCTCATTGCTATTTTTGCCATATTAATAGGAGAATTCAAATAACAAAGAAATGTCTCACGTAAGAAAGTATAACAGTCAAAAATTGATCTTTAGAACAAAATAAATCCCATTTTCTTCTTGTACCTGGGCCCTTTCTAATTTAAAAGCCCTTCACACTTTAACTCCCAGTCTAATCACTGCTAGGAGTAAGTGAAAACCAGAGTGAGGGACTTAATCTTATATCTTTATTGAAATTAAATTGCTTATTGTTAGTTGCTTTATTGTGTTTGTTAAAGTAAATCAAAGATCGAACAGACACGAGGGGACAGTTCTTAGTTGCCTCAGACTTTAGAGTTAAGTTACTACTAGTGAGAGTCTAAAAATCTTATCATGAACTGAGATTGTTTTACTTGATTTAGTACTTTAAATCTAATCATAAGGATTAAAATGGCAGCTGGTGTAGCACTTGAGGGCAGAAGCTGAAAGAGTGCTAGGAGTTCTGTGCCAACCAGGGCCATAGATTGAGTGCCAGATGAGTGGGGGCTACGCAGTGGGACCCTGCCTAAAGTCCGTCAAATCAAACAAAATAATTTAAAAAACAATAAAAATTCAAAAATTGTAGTTTTTTTCTCTTAAAAACACATTTGCTGGCTTTGTGTCTTATTGGATGGTTCTGTCAGGAGATTTTGTGACCAAATCCCATTCTCAGCTTCTTCACAGACCAAGGAGATGTGACTGACCCCTGACCTTATACATGCCTATCCGGACATCCTCGCATCATCTCATTTTGAGACTGGTGTCACGTGTTACACAACCAGTTCCCAACAGCAGCTGGCACTCATAGGGCCCAGGAATGATTCAGCTTCTAGTTCAGCTCCAGCCCTGGCCACTTACTTGCAGTGCACAAAGATTCAGACAGCCTGCTTGCTCCGTGTTATCCCTGCAGAGCCTGCCATCTTCCCAGTTCCTCGTTCATAGAACCTTGGCAATGAGGCACAGCACTGGGCCTGGCATAGAATCTCAATCAATGTGTGTTCATTAAATGAAGGCGATTGTGGTATTCTGCATTTAGTTTATAAGTGGACCAGGAACGCAGTCTCCCATGTGAGGCAGCGGAGGTTGCTTCTCCCTTCCCACTACTCTTCGGTAGACCATTCACATCATAACAGAATACTGACAGGAACAACATCTCATGGTCTAATGAATTTGACAAGCCCGTAAAGCCACTTGCCTCAAATGTACAGACACCTATGGCTGCCAGACTTAGTGAGGGTGGGGAAGTGGCTGCCTCCACAGGGCTCTCAGCTGGTGTCAATGCAAATCTTCTTCAGATCCACCGGGTCTCGCTGACAGTTACTGCTGGTTATAAATTTGGACGATGCATGTCTATACCATAGCCCACATGTGTCAAGGGGTCACCCTCAGTGATCGACACTTTCAACAGAACAGTAAAGGTCATGTCAAACGGCCAGAAGGGCTACTCTGTCACAGCGAGGAGCTACAATTGGTGTCCGGAGTCAGTGGAATGAGCACACATAGTCTTTCCAGTTTACCTGCCCTGTGACTTTTCATTCCCCCATTATTACCCACTGCACATTTATACTCACTTCATGTGCAGTTCAGTGCATCCCTGGTGCAGTGTGACGGGGTGGGCTTGGAAGATGTCAGACTCCGATTTTTCTCTCTCCTCTAAACCTTTGCGGTTTCCCGATGGGCTTGGTGTACTTACTGATCCATTCTTAGTTCAGCCATGTCTGAGTTGTGAGAGGAAGTGCTGCCCTGTCCCCCCCCCCCCACGGCCACGTCTAACGCCCTCACTGTGTCTCGTAG
Seq C2 exon
ACATCGCTGCCTCTGAGTCTATTGAGGAGATGCTGCTGAAAGCAGAGATTGCCTGGGAGGAGAGAATGAAAGAGTCCCCGTCTGTTCCTAGCTTAGCACAGGAGGAGCTGTATGAGGAGATCCTTCACGACCTCCCGGAGCTTTCCAGTAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016483:ENSRNOT00000022742:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=NA C2=0.173
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(19.5=65.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]