GgaINT0106584 @ galGal3
Intron Retention
Gene
ENSGALG00000016837 | MYO16
Description
NA
Coordinates
chr1:142455874-142457478:+
Coord C1 exon
chr1:142455874-142455949
Coord A exon
chr1:142455950-142457324
Coord C2 exon
chr1:142457325-142457478
Length
1375 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTGATGTTCTGATGTCTTAGATA
3' ss Score
6.89
Exon sequences
Seq C1 exon
ACCAGCCTTGTGAAGCTGCTTTTGATGCACTGGGCAAATCCCAATCTTCTTAACTGCAATAATGAGAAACCTTCAG
Seq A exon
GTAGGTGAAAATCTATGCAAGTTATCTGTATGTTAATTACCGTGATACTTCTTTCCTTCTTGCTGGCTTGTTATACACAGACGCGCACACAAAAACATACACACACACGTGTATGTATGCATGAACTTTATATTGTGTGTATACTTATATACATACATTACATGCATATATATGTTTTCTGTATATTGCTGAGAATTGCTTGTCATGACTGTGTCAAGAATTTCATATCCCATGATGACATTTTCTTCCACATGTTGCATTCTTTTATCATTATTTCTGTTTCTTGTAAGTTCTTCAGTGCCTTGTGATAACTGCACTTACACTTGATCTAAATCTTGGTGACTTCTTACTTAATTTCCTTCTGTTTCTCAGTTGATAGTAGTAGATAGCCTCATGAAGTAGAAACCCTGTTGATGCTGACCAAACACAAATTCACTGTCCAGCTTTCAAATGTAATACCTATTGCTTTCCCCAGAATAAGTCACTTTCTTTGACCAAATAGCAACAGGATCCAAAGTACTGACTAAGGGAAATAAAATTATAGATGAATGTAGGTTAGGGGGGACTTCAGAACTAACCCAATGAACAATGCGGAACTAATGTCAATAATGCTAAGTAGTAGTGCTGAAGAGAAGAAATCTTCTAAGTCTGGGATAAAATTGAGGATGGAACCTAGTAATGTAGAAAACTGTATTACCTTTCTGTCAGATGACTAGGAGAAACTTCCTTTGCATAATAAAATAGGATAAGTTATGCTTCAAACGATGTGCCACCTATGGGTGTACTGCTAGGGGACTTCAAGAAACTTAATCTCATGAAAGTTGTTCGTATTTAGATACATGACAGTTTTTATTAAATACTAAGGACTAAACTGAGATCACCTAGTAATACAGCTGGCTAAACACATTTAGTGTGCATTAGATACAACTGAGTTAACTGTATTTCTGGTCTGCAATCATGTCTCATTTCAGCACTTCTGTACATAAATCTTGTTTGTAGAAATGTAATAGATTTGAAAAGAATTTGAGTATTCAATATTCAGTATTCAATATTTAGTATTTCATTGAAGTGCCGAGGTGAAAGAGTTTTGTTGTTTTTCCTGATGTCCTGTGAATTGTTAAATAAATACTTCAGTTCACTACACAAATGGGTTTTGACATTTTGCACATCACAGCTTAATTTCATACCAAATTCATTCGCTTATGTATTTCAGGTATTATTTTATGATCAGTATCTGAGCAATCCTTTTCATTTTAACAAAATGCCTATCTGGCCAGCTGCTTAATCTTAATTTGATCTGGAGAGTTGAATTGAAAGGAGCTTTTCTGTACTGTTTTTTCTTTCTGTCTGATATCTTGATGTTCTGATGTCTTAG
Seq C2 exon
ATATTGCAGCTTCTGAGTTTATTGAGGAAATGCTTCTGAAGGCTGAAATTGTTTGGGAGGAAAAAATGAAAGACCCTTTATCTGTTTCTACTTTATCTCAAGAAGAGCCTTATGAAGAGATCATCCATGATCTGCCCACGCTTTCCAATAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837:ENSGALT00000036558:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(19.1=65.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCCTTGTGAAGCTGCTT
R:
AGTTTATTGGAAAGCGTGGGCA
Band lengths:
230-1605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]