BtaINT0097967 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015527 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr19:17794102-17798601:+
Coord C1 exon
chr19:17794102-17794272
Coord A exon
chr19:17794273-17798530
Coord C2 exon
chr19:17798531-17798601
Length
4258 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
CTTCCTTCTTGATTTCTTAGCTC
3' ss Score
8.5
Exon sequences
Seq C1 exon
ATTGATTACTTCAACAATCAGATCATTGTGGACCTGGTGGAGCAGCAGCACAAGGGGATCATTGCCATCCTGGATGACGCCTGCATGAACGTCGGCAAAGTCACTGATGAAATGTTCCTAGAAGCACTTAACAGCAAACTGGGCAAGCACGGCCATTTTTCTAGCCGCAAG
Seq A exon
GTACCGTGTATAATGAGCACATCCTCTCATTTTGATCTGTACAATTTTCCTCATTGTTTGACAGAATCAAATGAATTTTTATGTTGGGGTACAAGAATGTCCACACGAGTATGAAAGGCTCTAAACATCCCTGAAATGATGTATTGCTGTGGATAAATTCTGCTTCTCTGGTTTACTGGGATGATGATGATGATGTTGTTCAGTCACATCCAACTCTTTACGACCCAATGGACTGCAGCACTCCAGGCTTCCCTGTCCTTCACCATCTCCCGGAGCTTGCTCAAACTCATGTCCATCGAGTCAGTGATGCCATCCAACCATCTCATCTTCTGTCATCCCCTTCTCCTGCTTTCAATCTTTCCCAGCATCAGGGTCTTTTCTAATGACTCAGCCCTTTGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCATCAGTCCTTTTAATGAATATTCAGGGTTGATTTCCTTTAGGATCAACTGATTTGATCTCCTTGTTGTCCAAGGGACTCTCAAGAGTCTTCTTCAGCACCACAGTTCAAAAGCATTAATTCTTTGGTGCTCAGCCTTCTTTATGGGATGGTGTGATTGATAAAAATCATAATGCCCAGGAGAGGGCACTCTAGACTACTCAATTTGCTAGAAATAGGAAAAATGAACACAATTGTTTAGAAAGCATGATGTCATTTATAACCAATAGGTACAGAGACCTTGTTCATGTGCTAGAATTTTGCCCCTGCATCCGATAACTATGGCACTGAAAATAGCTTTTGTTCATGACTTTTTACTGTAATCCTCAGTTATAAAAATATAGTATATGTGCTCTGCTCTATGTGAGACTATGTGACTTTCTTGAAAACGAGAAATTCTAGCTGAAATTCTCATGTTACAAGGACACTCATTCCTTAAATAAATGGGTGACCTTTTTAACTCCCTATTTTTCACATTCTAAAAATGTTACAAACAGATCATACTTCTATGATAACTGGTGGCAGTTGTGGTTATCAGACCTTTGTGCTGCGCCTTGCGTATGATATGTTCGCCATGATATTTGTCCTAGGAGAGACACACCATCATCCCTAGGTGTTCCCTATAAATACAGGCTTGTCCAGCAACCATAAGCTGAAGGAGAAACAGGCCCCGTGCTTCTTCGCTTCCAGGAAGAAAGAGGCAAACGTTTCTGCTCCTCCATAATTCCGTGTAAATCTATGACATTTTTTAGTATGAATAAATCTATATTCTAACTTTGTCCCTTTTGACATTATGTAATTAGAACAGTAAGATTCCACAGTTAACTAGAGAAAGCATAAATCGTCAAGAAATAGATTACTGGCTGATATTTATTTTAGACCAGTTTATTTCCAAGACATTCTCTTTGGTCTGTTACTGAAGACTAATGTGTAGCCTGCTGTAGGTTAGCTTTCAGATAGTATGGTCTTATCTTTGTTTTAATTTTTACTTTTGGCCACACTGCGTGGCATGTGGAATCTAGTTCCCTGACCAGGTATTGAACCTACACCCCCTGCATTGGAAGCACGGAGTCTTAACCTCTGGGCCACCAGGAAAGTCCCTATAGTCTGATCTTTGACATTAGGGTTCCAGCTACAGTTATTCCTCCAGTCATTTCCCGTTTATAACACAAATACTGAATAAGTGCCTCTCGTTTTCCAGGTACAATCCTGACGGCTGGGGACAGAACAGTAAGCAAAGTTAGAAGCCACATGAATTATTTAGAGTGATACTTTTAAAGATGGCACAGTGACAGGGGCAAGTGTCCCATCTCTGAGGGGCTGGGTAAAAAATGTTCTTTATAATAATAATTCAGACTTTGGAGATTCGCCTTGTATTATGTCTACCAGATGGTAGACAATCCTTGTTTATCAAATTGAATTGGTCATGATCATACCAAAAAAATCTTAGGAAATGTTGAATTCTGAACTAAAACAGGCAACTCTCCATATGATTAGATAAACAACTATGATTCTCACATGAGGAATCGCTTCATTTTGTTATGTTTCACCTTGGCCATTTATGTACCTGAATGTATCAACCAAATATTTAAAGTAGAAGCTGTTCATGCAGTACTTTTAAGCACTAACTACTGACTTGAAAGGCTAAGTAGTAATTTATCTGTGAAGATGGAAATTTTCTTTTCTTTTTTTTATTGTGGGAGCCCAGGTTTTCCCAACTCTCAGACCAGGTGGCTCCTTTCTCCCTCAGCAGCAGCATCTCTCAGACATATCTTGAAATGGAAATTTTTTGTGTTCTTTTCTGGGATTTTTGCCTAATGAATGAAAGAAATGAAATAACCAAGCTGTCAGGATATTTTCATCACTGTGAACCTTTCTGTTAAATAAATGCTATTATCCTGTATGTCACAGCAGGTATTTTAATTCATTATTGATTACTAATGATTAACTACTTTTATTGGCAGGTTAAAGAAGAGGTTTCTGGCTTGTGTTTATTTAGGGGCTAAACTGTTTGTCATGTATTAAAATTATCATGCAGAGGCAGACAGATGATCCAATAAACTATAAAATTACTGTTAAAAGTATTGTTAACATGTAAAGTTGAATGATAAATAGGTCTTATTTTTTTTAAAGTAAAGAAAAATCTAAAAAGTTCTATGTTTAGATCAGTTAAGAATTTGCAGTATCTAAATGTAAGAATATTCAATTAGTATAGATGTCTCTTGAGTCTTTTTCCTTTGGGAGTTTTATAAGTAGAAGGGTTTTGTAAAAGTGGTTGATAAGAGAGAGGGAAGGAGAGAGGAATTAAATATTTCAGAGACCCCTCTGAATGTTAGATGCTTTGTTCTCCACAGTTGGTTTAACCTCTAGAACAACTCTACAATAAGTGATTACTGAAGGAAACAAAGCATGTAGATGGTAGAGACAAGACTGCAACCTCAGAAGTCTGACTCTAACTTCCTTTAATTATTAATTTGAATTAATAGACTAAGTATTCCCTTAACAGTCTACATCCATAGAGAACCCACCATCCTGGTTGGGGTTGTTTGTTATCTAGCATGACAAGCCAAGTGATGTTTCTACGTAACCATACTCAATGCTTACGGATTCTTTTTTTTTTTTTTAATGTTGACCATTTTTAAAGTCTTTATATTGCTTCTGTTTTATGTTTGTTTGTTTGTTTGTTTTTTGGCTGTGAGGCACTGTGTAATCTTAGCTCCCCAACCAGAGATCAAACCCACATCTCCTGCATTGGAAAGTGAAGTCTTAACCACTGGACTGCCAGGGAAGTCCCAATAGTTACGGATTCTTAAACATCCGCTTTTGAACCTAAAGGATATCAAGTGATCCTTTATAGGGTGGTCAAAGAATCTACGTGCTTCTGTAATAAGGAAATTGCAGAAACTTATAGAGATCCAGGGCTCTATAAAAACTGCCTTCTCAGAGAGGTCCTCTTCAGTGAGAAACAGCTACAGAAGGTTGATCTTCTGTGAAGTGGTAGACCTGGAGTCCCAGCTTAGCAGAAGACGGTGAGCCAGGCTGACGTATACATAGCAGAGTACAGACATGGCATTTGGTCCCAAGAACTCTTCCCAGAGCTACTGCTTATCAGCTACAGGACCTTGGGCCAGTTACCTAACCTGTCTGAGGCTTAGTTTTCATGTATGTAAAAGAGAATCCATAATCCTTAGTTTAAATATCAGTTGTGAGTATTGAATGAGATATCCATGCATAGAAGATGGCAAATCCTCAAAATGGTCTTCTTTAAGTGGGACATGGAGGAGAGAGGCTCTATCAGTCAAGGTTGGCTGGGCTGTGTTAACAGTGGAGATTTAAGTGTCATAGACAGCAGAAGTCTATTTCTCTCCCAGGGTCCCAGACTTCTCCCATCTTCAGGCTCTTCCATCCCCTCAGGACCATCCTTCTCTGCATCCAACTAGTGGGAGTTGAGAAGAAAGTACAGAGGAGAGTCACCCGCTTCTTACCAGCTTTGACCTTGAAGAGCCTTATCCCCTCACACTCACCTTCCATTGTGCAGAGCTTGGTCACCTAGCCATTCCCAGTCACCAAGGTGGCCAGGAAATGCAGTCTGGCTCTGTGCACTTTGTGGGGGAAAGTTCTCAATCTTTACCACATTTGCCAAAATAAATAAACCCCCACACACTGGGACTTCGTTCATAATGATATCGTGATTTGTGACATGATTAACTTCTCCTATTAAGTTGGAATATAGTTTTAGAAAACTTAAAATGTCTATTTTCAAGGTCATCTCCTTCCTTCTTGATTTCTTAG
Seq C2 exon
CTCTGCGCCTCGGACAAAATCCTGGAGTTTGATCGAGATTTTCGAATTCGACATTATGCAGGGGACGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015527:ENSBTAT00000020634:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development