RnoINT0097067 @ rn6
Intron Retention
Gene
ENSRNOG00000003276 | Myo1d
Description
myosin ID [Source:RGD Symbol;Acc:621321]
Coordinates
chr10:68040747-68045200:-
Coord C1 exon
chr10:68045030-68045200
Coord A exon
chr10:68040818-68045029
Coord C2 exon
chr10:68040747-68040817
Length
4212 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTATGTCCTTTATCTCTTAGACC
3' ss Score
9.31
Exon sequences
Seq C1 exon
ATTGATTACTTCAACAACCAGATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTATGAATGTTGGCAAAGTCACTGATGGAATGTTCCTCGAGGCCCTTAACAGTAAATTGGGCAAACATGGTCATTTTTCCAGCCGAAAG
Seq A exon
GTAATAAGATCTTCCTCTTATCTTGAATTATAAGAATTTTGCTTATCGTTTGGCAGGGCAACACTGCTTTATAATAAGTTAAAAGAATGTACAGTCAAATAAAGGGGAAAGGCCTGATCTCTGTGAGTTCTTTTCTGATACAGTGATGAAGTTGACAGAATCATAGTATCCAGGAGAGGGCGCTACAGACTAAGGAATTTACCAGATGCAGGAAAATGAACAGGATTCTTTAAAAGCATGATGTCATTTATAGCCAATAGGTGCTGAGTCCTTGTCCATGTGCTAGAATTTGATGTCTGCATAAGAAATTGCTTTTGTCCTTGACTTTCCACCACAATCGTCACTGACAAAATATGGAGTGTGTTCTGATTGCATTCTTCAGACCCTGGGACCCTAGAGATGTTAGCTGCAGTCATGGTTGTTACAGAGAAATGCATTCTTTCAGGGTATTGAGTAAACTTCCAAGTCTCCATTTTTTTACAATCTAAAAATGTCACAAACCACATTTGTATAATAATTGGTAGGGGTTGTGGTTCTCAGACTTTTGTATGAGATGTATATACAGTATGCTTGTCATGCATGTTTGTTTAGGAGTCTGTGTTGGGGAGGGACACCTCATCATCAACCCAGGCTTCCACACATACTCGAGCTTGTCCAGGGACCAGATGCTGCCAGGGAAACATTCCTTGTTCCTTCCCATCCAGAAAGAAATGGGCAGCAGCCCTGGTTCTCTGTAAATCTGCAGCATGTTGCCACTGCTGCATGAATAAATCTACTTCCTAACTCTGTCCCCTTCAGAATTATGTAATTATGTAATCTCCACCATTAACTATGGAGAAGGTGTGAGTCATCTGTAAATTGATTATTAACTGACACTTATCTAATGGCAGTTACTTGTAGCGACAAACTGGTCTTCAGCTAATGCAGACTGATCTTTGACATTAAGAACCTAGGTCCCTTTATCCTGTTCCCACTCACACCCCAAAGGTTTAATTAAGTACCGTTCGTTTAAACAGGTCTAGTTCTCAGTGCTGGGCACAAAACTGCACAAAGTAGAAAATAACCTTAGTCACAGTGAGACTTTAGGGGGCACCTTTATCTAGGCGAATGGCTGACTGGGAGGTAGTTTAAAGATGTCATCACAGCTTATGGAAATTCATCTACTAAAATACCCTCTGGATGCTAGACAGTCAGTGTTGGTGAAATTATTTAAATTTGTCATACCAAATAAATCTTTCTTAAATTGTTTATATTTAAATAGATATCTGTAAGTCTCAAAAGTGACACCCCAAATTATTATTCTATCTTTTACTGTGGCCATTTTTTATAGCTGAATTAAGTAAATTGGTCAGGCAAAAAATTATTTTTTTCATTTTATTTTGTGTGTATGAGTATTTTGCCTGCATGTATGTGCATCATGTGCATACAGCATCCTAAAAGGCCAGGAGACAGCGTCCTCAGGCTGGAGTTGTGGGAAGTAGGACTTGAACCCAGTTCCTCTGAAAGAGTAGCCAGTGCTCTTCACCACTGAGCCATCCATCTAGTCCTTGAAGTGTTTTTGAAATGTAATCTCATTTTCTTCTTTTTTGAGATGGACTCTAGCTCTCTGTTGCTCAGGCTGACTTCAGACCTCTGGGCTCTGCTGATCCTCAGCCCCTCAAGTGACTAACACTGGCATTGCATGCTAACACACTAAGCTGTAATCTTTCTCCTTAAGGCAACCGAATATCTTGTGTATAAACACTTGCTACTGATTTGATAGGAAATACTAAATAGTAATTTATATAGTGATTGATTTCTTTCTCTTTTATTTATTTTCTTCCTTATTACTGTTTTTGGTGGAAGTTCCAGTTTCCTAATAAACTAAACACCTACTTCTTTTTCTTCCTCCCTCAGTATTCCCTGGATAAATACTGAGATGGAGATATTTAAAGTGTTTTCTTTTGGGGAATTTGTATATATGTGATATGTGTATATGTCTGTGTGAAAGCATATATGGAGGTCAGAGGTTAATATTCTATATCTTTTCTATTACTCTCCAACTTTTTAAAAATAATTTACATTTATTTATTCATTTGGTCATGTGCATGCATTTATATACATTGGCACACGTGTGGAAGTCAGAGGACAACTTGCAGGAGTTAGTACTCTCCACCATGTGACTTCCAAGGATCAAACTCAGGCTTGGTGGCAAGCACCTTTGTCCATTGAGCCATCCCACTGGCCTCCTAGTTTATTTTTTGAGACAAGGTCTCTCACTGAGCCCAGACCTCCCTGATTGACCTATCTTGACTGGCCAGCAAGCTTCAGGTGTCCTCCTGTCTCTACCTTACTAGCACCAGGATTACAGACATCACTGTGCCCAACTTTTATGTAATTGCTAAGGGTCCAAATCAAGTCCTCATGTATATGCTGCAAGCACTTCACCAAACAAGCCATCCCCCAGTCTCATCTCCTAAGGAATTTTACCTAATAAAAGAAAGAAATGAAATGGCCAAGCTGTCAGGATGTTTAAATCACTCATACCCTTTTGTTAAATAGTCCCATTGGTTTGTATGTTAAGCCAGGTTTTGTTTGCCACTGCTGACTCATCACACACATTTGCCTACCAGCTCATTAAAGAAAAGACTGCTGGCTTTTATTTGGGGCTAAAAAAACTTCCTTTGCATTAAAGGTACCATGGAGAGGCAGTCACATGATCCAAACAACTATAAAATATTTTAAAATAAAAAGCTAAATAATAAATATATAACAATACAAGAAAAAGTTAAAGGAGTTTTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTTAAGGACAGTCACAGCTTTGCATTTTATCCAAATATCAGAATGTCATAATTTGAGTCTTATTCCTTCAGGAGTTTTACAGATTAAAGGATATTTCAAAAGGAGGCCAGGAGAGGCAGACAGGCTAGAGAGAGTGCTCAAGAGTTAAGAGTATATACTGGCCTTGCAGAGAACCAGAGTTCAGTTCCCAGCACCCATGTCAGTCAGCTCACAACTGCCCTTATGGCAAAAAACCCCATATGGCCTCTGAAGGACCCCACACTCACCATGCACAAGCCCTCATACACACAACTAAAAGTTAAAAGTGCACCTTTGAAAGAGCTGGAGGATGCATTTTGGAGACACCTGTATACTCGATGCTTTGGTCTCCACGTCTTTCTCCGGTAAGTGGTTATTGAAAGAGAAAAGTGAACCTCCAGCTTCCTGTGAGTCTTCATTTGTGAATGTTTTCCACACCGCTCCTTCAGCACCTGAAGCCTGCTGACCTGCATTACGTGCTGTATGCCACTGTCATCCAAGTGGTTCTACTATTACAGCATGAAGAGGTGCTGCATAGATTATTACTTGTCTGTCTGTCTGGGCTCTACTGTACCAAAGAACATTGGAGGAAGTCATGAACAACCACCAGGACTTGCCTGCCATGTCATAAAGTATCCCCCTTCAATGATAAAGAGGTGCACACATTGCTCTCCTGTGAGGAGCACTAGGCTGGAGTCCAGCTCAGCAGGCAGATGAGCCAAGACCTGTATGCATGAGGACATGCTCCTTTCACTCCCTGGGGCCTTTCCAGGGCCACCGCTTACTAGCAATTTGCTGTTGTATTATGTGTGTACCTCACTGACCCTCAGCCATGTATGTGAGGGAGACATTGCTATACTCTGAGTAGTTGTAAGGACTGTGATATGTGTAGTCCTCAAAGCTAGAGCCTTCAGTGCGATCCTCCCAAGTGGAGCACGGAAGAGAAAGATTCAAGTGTCAGAAGATAGCACAGCACATGTCGCTTTCTCGGAAAGCCACACTTCTCCCGTTGGTTGGCTGCCCTGCCTGCTAGGGTCCATCCTTTACATCCAGCTAAATCAAGGGCATCATTTTCCAACCTCTGACCACACTGGGTAGGGAATAGCCACACTTCATATGCATTGTCCAGAGCTGGCCACTTGGCCATATTGACTAGTAGAGCAGCCAGCAAGTGGCAGCCAGCTGTGTGCCACAGGAGTGAATCACTGCCGAAAGCCTTTACCTTGTCAGCCATGGATTAAACAAACCCCACAGAATGGGACTTTATTTGGGTATTGTAATTTGTGGTGTTTGGTCACAAATATTAAGTTGGAATGTACTTTTAGAAGTTAAAAATATCTTTTTTCAAATTTATGTCCTTTATCTCTTAG
Seq C2 exon
ACCTGTGCCTCAGACAAAATCCTGGAGTTTGATCGGGACTTTCGAATCCGGCATTATGCAGGTGATGTCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003276:ENSRNOT00000004609:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]