BtaINT0098154 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58084339-58086528:+
Coord C1 exon
chr10:58084339-58084436
Coord A exon
chr10:58084437-58086441
Coord C2 exon
chr10:58086442-58086528
Length
2005 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
ATTTCCACCTTTACTCATAGGTT
3' ss Score
8.36
Exon sequences
Seq C1 exon
TTCCGAAACTCCCTCCACCTGCTTATGGAGACCCTGAATGCCACTACCCCTCACTATGTGCGCTGTATCAAGCCTAACGACTTCAAGTTCCCATTCAC
Seq A exon
GTAAGTATTTCTCAACTGCTGAATTTAAAAGAATCCATATCTTGTAAGGATTGTCAAACCGGCAGCTGGGAAAAAAATACGTGAGTAAATCTTCATGTCTTGTAGAAGAAATAGTTAATAGAATTTTTTTCAGTTTTTGTTCCCTTTTAAGAGTTTGAGAACAGGGACTTCCCTGGTGGTCCAGTGGCCAAGACTCCATGCTCCCACTTGTTGGGGCCTGGATTCAGTTCTTGGTCAGGGAACTAAGATCCACAGGCCATGCAGTGTAGACCACCCCCACCCCCAACCCTGAAAAAAGTGAGAACAAATTAGCAGCTGGCCTTATGACAATTTTAAACATTTGAGGTCAACCACACATTTCTAGTTCTACTTTCTATTTTGAATTTACTTCAGTTTAAGACCTTTTTGGTTAATTTGGGCTTCAGTTAAAACCAGAGCTGGGTGAGATAAGGTTGCTTTAGCAAAGGCTCACAGTCATCCCTGCTGCTTTTCAACTGTTGAAAGCATCAGAGGAGTCTGCTTTTTACCATGCATCTTGTCCTTCATCAATATCATACATGAGAGGAAGTTTTTTCCAAAACAGAAATATTTCTCTAATTTTGAAGGTAATGCATGCACATTGTAAAAACAATTTTCAGGAAATATAAAACAGTATAAAAGTAAATGAAAAAGCATTTCATTATACCTAGAGAGGTAATAAGTATTAACTGACATAGATCTTGATCAGTCCTTCCCTGCTCTGTGTGTGTTTCTGTGAAAGAGAGACACATTAATAAGAGAGAAGGAATCATGCTGTAACTGCTGTTTTACTTCACTTTCAACTTAATAAATTGTGAGTGTTTTCCATGTTTATAAATACAAATCGTTGTCACCATTTTAAGGCTACGTCATATCTCATTATAGAGACATACCATCATTTATTTAAGTTATTCCCTGTTGATGGCCATTTGGGTTATTCCTTGGCTATGATAAACATCTTTTCCCAAACATTTCTGTATATTTGCCTGCCTGAATATCTCCTTAGACTACTGTATTTCTAGAACAGGAATTTGTGGGTCAAAGATAAGGCACCCTTCCCAAACACTGTAATAACTCCCACTCTACACCTTGTGCATGCTCCTGAACTATGCTCCTGCCACTCCTGCCTGCTGGAGATTCTGCCTTAGACTGCAGGGCATTTCTCAAAGACTCTTGTATTCTTCTCATTCCCAAGAAGTCTTTCTTGAGGAGGTGAGAAGCAGGAAGAAGCTTTCATGCCCTGGGCAACTCTTCTGGACAGCCCCAGGGCCCATTACCTTGAGTCAACCAACCCCATCTCCCATCACCAACAAAACACTGAGAAGACGGCACCACAGAAACCTCAGATAGGTCATTCAGGGCACAACTGGGGAGTAAGGGGAGTGATCATCCTGTAAGAAGCAGGCCTTGCTACTTCCTCTTATAGTGTCAATTTAACATTAAGGTGCTGTTTATCTAGAGTGAACTGCAGCTAAGATATAAAATACTTTTTAACTGACATGGACACTTAATGATTAGTATGTATACACTGAGTTAAATAGCTTTTAGAACACTAGTAATTAACAACAACAACAAAAAAAAACTGAATGGGGCATGTTTAATTTGTTCTTCTTGTTAAAGAAATCTTCAGAGCTGGCCAGTCTTTATTCTCGGGTAGCTCTGTATGGTGAACTAAAGAATTATGAGACCAACTAGTCGGGCCAAGGCGTGTAATGAGCACTGCACAGTACAGAGGAGCTTGGGCTTTTTAAATATGCTCAGTGGTATTTCTTATGAGTTTTTGGTGTATGTTCTTACTGCTAGTAATCTTCCCCACTCTCAAAATGGAGTTTTCAATTTTGAATCAGTACTCCAACATTTGAATTTTTTTTTTCTAATTTATTCATTTGGCTCTTTACAAAAGATTTCAGTCTCTGGATTGAGGACAGTAGTTTGTGGCTAGAGCCAGACTTTTTTGTGTACTAATGATTTCCACCTTTACTCATAG
Seq C2 exon
GTTTGATGAGAAGAGGGCAGTGCAGCAGCTGAGAGCATGCGGTGTCCTGGAAACCATTCGGATCAGCGCAGCAGGTTTCCCCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489:ENSBTAT00000008516:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development