MmuINT0104397 @ mm9
Intron Retention
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75009239-75012023:+
Coord C1 exon
chr9:75009239-75009336
Coord A exon
chr9:75009337-75011936
Coord C2 exon
chr9:75011937-75012023
Length
2600 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
GTTTTTGTTTCTTCATGCAGATT
3' ss Score
10.02
Exon sequences
Seq C1 exon
TTTCGAAACTCCCTTCACCTGCTTATGGAAACCCTTAATGCCACTACTCCTCACTATGTACGCTGTATTAAGCCTAATGATTTCAAGTTTCCATTCAC
Seq A exon
GTAAGTCAAAGTGAAATAAGGAGAAAGACTTTTGGGGAAGATCTTCATGTCTTGTAGAGGGAATCTATTTCCAAAAATTTCTAGTTTTTTGACAACAAGAAAACAAATTAGCAGTTGGCTTTCTAAGGATTTGAAAATTTGAGGCCAATGGCATGTCTTTGGTTCTGGTTTTCTGTTTTGACTCCATCTCTGTTGGAGATCTTTCTGGCCTTTTGTTAATTTGGACATCAGTTAAAAGCAGAGCTTCTTGGACTAAAGGCTTCTCTGGCCAAGGCTTACCTGATTCTTTTTATCTGTTGAAGCCAGAGAATGTTTACCAAAATCTCATTCTACTTCAGATACTAAGTCAGAGGTGAAAATGGATCCCTGGAGATGATTTCAAAATATAAATATTTCTCTAAGTTTAAGAGTACTCCATATATGCTGTTGGGATGGTCTTCAGGAGCTAATGCTAGGATTTAAGCAGTGTGAATTGGCATAGGTACCAGACTATTAGCATTTACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAGTGAAAGAGAGAGACAGACAGACAGACAGTAACAAGGTAATGTCACAAGCTATAATTGCTACTTCATTTCTGCTCTTAACATCATTGACTGTGGACAGATCCTAGATTAGTATTTAAAGACCTACATTATTTATTGAATGGCTGCAGAGTATCTTATGGTATATATAGTCCACAATCTATTTAAATCATTCACTATGGATAAATTATTTAGGTTGTTACAGCAGTTAAAATATGCTTCAATTAAATTACAGTTACATCCCTTTCCTCCTTCCAGTCCCTCCCAGCTGCCCTTTCTCAAACCATTCCTATGTCCCATAATAACAATTTTTAACAAATATTTGCCAAATATTTCTGTACATCCTTAAGATAACATGATTCTAGAGGGATTTGTGGGTCCAAAGATCAAGCATATGATTTGATTATTATGCATATGAAATGAAATATCATATTTTATCCCATAAGTAACCACACATACCATGTGCCAAATAAGAATTTTTAAATATATTTTTAAAAGACCAGGCATAAGGCTATAGAGATAGCTTAGCTCTTAAGAGCACTGGCTTCTCTTTCATGGTACCTGGTTTATTTCCCCACACCCTGATGACAGCTCACAGTCATCTGTCACTCTAGTTTCACGTCACTTGATACCTTCTTCTGGCCTCTGACATTGTGTAGATATACATGCAGGCAAACATCCATTTATACATAATAAAATATAAACAAATAAGTAGACAAAAAATAGACTACCCATCTATACTGAAGACTGCAGCTTCTACTCTACAGTGTATGAGTGACTATGGTCTTGCTGGTCCTCCTGTGCAGATTCTGCCTTATATTTCAGGTTAGTTCTGAAAGACTGCCATATTCCTCATCATCACTTAGATCCTTTCCCTTGGAGGAAGTGGGAGCAGGAAGAAGTTGCCATCTGACTGTGAAGTTGTATTAGCAAGCCCTGTCTCCTACCAGCAATCTGAGACCTGAGAAGACAGTTATAGGAATGGGCTTGGACAGACACGCAGAGCTTAATTGTACTCAGAGCTTACTACCAACAGGAGTAGTCACCTGGCTAGAAGAACTTTCTGATACTTCTTTGATGTCATTTAACATTAACATGCCTTTTTTTTTAAAAGTGTCTTAGTTCATTTTCTGTTTGATATAACAAAAATGCCATGACCAAGGCAATTTATAAAAGAAACTAATTTAGGGCTCATGGTTACAGAGTATTAGAGTCCAGGACCATCATAGTGAAGACCATGGCATGAGACAAGCTGGCATGATGCTGCACCAGTGCTGAGAGCTGACATGCTGATGAACAAGCAAAGTGCAGAAAGAAACAGAGAAAGCTAACTGGGAATGGAAAGGGCTTTTGAAACCCCAGTGACATATTTTCAATCCTCCTAATCCTTTCTAAGCATTTCCATTATCTGGGGACCAAGCATTCAAATATATGAGCAGATGGGGGTCATCCTCACTCAAACCACCATCTTTATGATGAAATAAATGTGAAATGTAATACAAAATAAATATTTTTCATTGCTTTGAATGCTACAGTGCTTCATATGTACACAGTAAGTAGCTTATAGAGCAACAAGGTTGTTAGGTTTTTTTGTTTTGTTTTTAAATAACTGAATGGGGTGTGTTTAATTTGTCCTTTCATGTTCAATGACCTTTATCCCAGGGGAGGACCATGTGCTCAGCTGATGGTATCTGAGCATTTTCAGTCAGGCTAAGCTATAAATACACACTCATTACAGGATGGGCACAGTGCTGGGCAACCCTGTCTTCTTTATTTTAAGGATGTTCAGTGGACTTCCTGGTAAGACTGTAGTGTGTCAACTGGAAGGGCTATCCCCAGCTCTTTATTTCTACTGCTAATTATCTCTTTGCTGCTATTTTATGGAGTTTTCCATTTTGATCACTGTTCCAGCTTTTGAATGCTTTGTTTTCTAGTTTATCTACTTGGCTCTTGATAAAATAATTTAACCCTTGATGGCCTGGGTCTTTTGTGACCTAACAGTTTTTGTTTCTTCATGCAG
Seq C2 exon
ATTTGATGAGAAGAGGGCAGTGCAGCAGCTAAGAGCATGTGGTGTCCTGGAGACCATCCGGATCAGCGCAGCAGGGTTTCCCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593-Myo5a:NM_010864:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: