GgaINT1018699 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8299329-8300158:+
Coord C1 exon
chr10:8299329-8299426
Coord A exon
chr10:8299427-8300071
Coord C2 exon
chr10:8300072-8300158
Length
645 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGC
5' ss Score
6.58
3' ss Seq
TTCTTTTTATTCCTACATAGATT
3' ss Score
8.72
Exon sequences
Seq C1 exon
TTTCGAAACTCTCTTCATCTGCTGATGGAAACCCTGAACGCCACAACTCCACACTATGTGCGCTGTATTAAGCCTAACGACTTCAAGTTTCCATTCAC
Seq A exon
GTAAGCTGGTTCATGTATGGTTCATATAGGCCTGTGAATGGGAGGGAATTCCCCAAGGATTTTAGGGTCCAGGTTCTGCTAAACATTGCTCGATCAAGAGTGAAGTGATGTGCCTCCTTTCTGTTGTTATGTGCTTATTGTGCATGCCTATGTGTGCTTACAGCAGGGTATGTTTAGGATTGAGTAGAGGGAGAAGTACTTTCTGAACCTTTTTCTTGGATGAGAAATACCTGCAATTTCATTTCAGCTGTTTTGAATTTGACTGATGGCATATCTTACATTTGCTGGAATTTGCTTTTGCTAATTCCATTTTTTTCTTATTTCCAGTTATTCCTAATCTTCTTTCATGTATGAATTTGCTCAGAGCTTTTCTCAAATGCCTGTTTAACAGCTGGGTACACAAAGACCTCCATCACCACGTGTGTCAGGCAGGCTGGTGAGAAGTGGGACAAAGGGTTCTGTAGATGAGCATCTTGAAGCAGCTCAGGCAATTCTGAATTCCGTGATCAGGCTGTTCTCTGTTATTGCTGAGTTTTGGAAGCACTACCTGTACTTGCTATGCAGTTGTCACATCCCACAGATCCAAAGGTACCAGATAGCACAAGACTAACCCCACACCCACGGGTTCTTTTTATTCCTACATAG
Seq C2 exon
ATTTGACGAAAAGCGAGCAGTGCAGCAGCTGAGAGCTTGTGGTGTCCTGGAGACCATCCGAATCAGTGCAGCTGGTTTCCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]